BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20070.1
Length=460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319554 jgi|Araly1|319554|fgenesh1_pm.C_scaffold_3002570 429 8e-120
> Ahg319554 jgi|Araly1|319554|fgenesh1_pm.C_scaffold_3002570
Length=273
Score = 429 bits (232), Expect = 8e-120
Identities = 260/273 (95%), Gaps = 3/273 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAACAATATGGTCGCATCTCCTTATAAGAATACGTTCATGATGATTGCTCTTGTT 60
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAACAAGATGGTCGCATATCTTTATAAGAATACGTTCATGATGATTGCTCTTGTT 60
Query 61 CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGGAATA-TAT--GATCCGATG 117
|||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 61 CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGTAATAATATACGATCCGATG 120
Query 118 TGTCCTGGAGTATGTGGAAATTTGGTTAAACCAGATTGCAATGGACTTTGCCATGAGTTA 177
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 121 TGTCCTGGAGTATGTGGAAATTTTGTTAAACCAGATTGCAATGGACTTTGCCATGGGTTA 180
Query 178 GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAAGAC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAACAC 240
Query 238 TCTGGACCTGTTGATGTTCCACCAACTGCTTGA 270
|||||||||| |||||||||| | |||||||||
Sbjct 241 TCTGGACCTGCTGATGTTCCAGCTACTGCTTGA 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16635836804
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5