BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20070.1 Length=460 Score E Sequences producing significant alignments: (Bits) Value Ahg319554 jgi|Araly1|319554|fgenesh1_pm.C_scaffold_3002570 429 8e-120 > Ahg319554 jgi|Araly1|319554|fgenesh1_pm.C_scaffold_3002570 Length=273 Score = 429 bits (232), Expect = 8e-120 Identities = 260/273 (95%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 1 ATGGCAAACAATATGGTCGCATCTCCTTATAAGAATACGTTCATGATGATTGCTCTTGTT 60 ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAAACAAGATGGTCGCATATCTTTATAAGAATACGTTCATGATGATTGCTCTTGTT 60 Query 61 CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGGAATA-TAT--GATCCGATG 117 |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| Sbjct 61 CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGTAATAATATACGATCCGATG 120 Query 118 TGTCCTGGAGTATGTGGAAATTTGGTTAAACCAGATTGCAATGGACTTTGCCATGAGTTA 177 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 121 TGTCCTGGAGTATGTGGAAATTTTGTTAAACCAGATTGCAATGGACTTTGCCATGGGTTA 180 Query 178 GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAAGAC 237 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 181 GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAACAC 240 Query 238 TCTGGACCTGTTGATGTTCCACCAACTGCTTGA 270 |||||||||| |||||||||| | ||||||||| Sbjct 241 TCTGGACCTGCTGATGTTCCAGCTACTGCTTGA 273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16635836804 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5