BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20080.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480462 jgi|Araly1|480462|fgenesh2_kg.3__3163__AT2G20080.1 1110 0.0
Ahg353917 jgi|Araly1|353917|fgenesh1_pg.C_scaffold_7001090 135 5e-31
> Ahg480462 jgi|Araly1|480462|fgenesh2_kg.3__3163__AT2G20080.1
Length=943
Score = 1110 bits (601), Expect = 0.0
Identities = 809/902 (90%), Gaps = 43/902 (5%)
Strand=Plus/Plus
Query 1 GGCGTATCTATTGAAATCTGGAAACAATCTGATCCAGCGATGCAGTAGTTATACACTAAG 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 GGCGTATCTATTGAAATCTGGACACAATCTGATCCAGCGATGCAGTAGTTAT--ACTAAG 58
Query 61 GTTTTCTATaaaaactcaaaatgaattgtaaaaaagattataaaaaaGAGATCACCAATT 120
||||| | | | | ||| || | || | | |||||||||||||||||||
Sbjct 59 GTTTT-T-T--TTA-T--AAA--AA--CT----AA-A--A-AAAAAAGAGATCACCAATT 99
Query 121 CACCATGAAAGAGATCTCTCCAATTTCTTAGCTCAAAGCAAAATAAGAAAATTCATTtct 180
||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||
Sbjct 100 CACCATGAAAGAGATCTCT--AATTTCTTAGCTCAAAGCAAAATAATAAAA---A--TCA 152
Query 181 tctctctctctccctctctttctctctagagaagactttctctctctagtttctTG--AA 238
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 153 TATCTCTCTCTCCCTCTCTTTCTGTCTAGAGAAGACTTTCTCTCTCTAG-TTCTTGCCGG 211
Query 239 TTTTCCGGTATACCTTAC--GATCGCAAGT-AAAATTTAAGGCCGATCAAAGAAACATGG 295
| | || || | |||| |||||||||| |||| |||| ||||| |||||||||||||
Sbjct 212 TATACC-TTA-AAATTACAAGATCGCAAGTGAAAA-TTAAAGCCGAGCAAAGAAACATGG 268
Query 296 GAAGTACTTTCTTTGGTAGACCAAACGTGGTG-GGATCTTCGCCG-CCTTCATCGTCTCC 353
|||||| ||||||||||||||||||| ||| | |||||||||||| || ||||| |||||
Sbjct 269 GAAGTAGTTTCTTTGGTAGACCAAACATGG-GAGGATCTTCGCCGTCC-TCATCATCTCC 326
Query 354 GACGTCATCCTCTTCTTCTCCAGCGACAAGAAGAGGGAAGAAGAATGGCTCCGAGAAGCC 413
|||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 327 GACGTCTTCCTCTTCTTCTCCGGCGACAAGAAGAGGGAAGAAGAATGGGTCCGATAAGCC 386
Query 414 GAAGCAGCCACAGAGAGGTCTTGGAGTAGCACAATTGGAGAAGATTAGATTACATGGCGA 473
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 387 GAAGCAGCCACAAAGAGGTCTCGGAGTAGCACAATTGGAGAAGATTAGGTTACACGGCGA 446
Query 474 AATGAGTTGCAATAGCTTCAACAGTTATAACCCTTCTTTGTATCCTCAGGAGGATGTGAG 533
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 447 AATGAGTTGCAATAGCTTCAACAATTATAACCCTTCTTTGTATCCTCAGGAGGATGTCAG 506
Query 534 GATGCAAGGAGGATATTCATCCATACCATCACAATCTTCGGCTCCTTATGGTTTCTATCC 593
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 507 GATGCAAGGAGGATATTCATCCATACCATCACAATCTTCGTCTCCTTACGGTTTCTATCC 566
Query 594 AAATATGATGATGGGAGTACATAGAGATCAATACGACAGAGCAACCATGAGCTGGAATCC 653
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 567 AAACATGATGATGGGAGTACATAGAGATCAATACGAAAGAGCAACCATGAGTTGGAATCC 626
Query 654 AAGCTACGGCATCTTAGAGAGCCAACATTCTTTGGAACCAAACATCACCAGACATTTCTT 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 627 AAGCTACGGCATCTTAGAGAGCCAACATTCTTTGGAACCAAACATCACAAGACATGTCTT 686
Query 714 AAACGAGGATCCAAG-CTCGACAACAAGGCGGAGTAAATCTTTGGGATCGGGAATCCAAC 772
| |||||| || | ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 687 ACACGAGGTTCTTACTCTCT-CAACAAGGCGGAGTAAATCTTTGGGATCGGGAAACCAAC 745
Query 773 ACTCGGGATCGAGTGAAAATCAAGAGGTGGACTTGGAGTTGAGATTGTCACTTTGACCAT 832
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 746 ACTCGGGATCGAGTGAAAATCAAGAGCTGGACTTGGAATTGAGATTGTCACTTTGATCAT 805
Query 833 TACTTTGTAATGGTTTGGTCTTTATGAAATTGAAAAGAAGTCGTATCATTTCAATATGGT 892
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 806 TACTTTGTAATGGTTTGGTCCTTATGAAATTGAAAAGAAGTCCTATCATTTCAATATTGT 865
Query 893 AT 894
||
Sbjct 866 AT 867
> Ahg353917 jgi|Araly1|353917|fgenesh1_pg.C_scaffold_7001090
Length=555
Score = 135 bits (73), Expect = 5e-31
Identities = 175/221 (79%), Gaps = 20/221 (9%)
Strand=Plus/Plus
Query 359 CATCCTCTTCTTCTCCAGCGACAAGAAGAGGGAAG---AAGAATGGCTCCGAGAAGCCGA 415
|||| ||||||||||| || | ||| ||||||||| |||||||| || || ||||| |
Sbjct 29 CATCTTCTTCTTCTCCGGC-A-AAG-AGAGGGAAGAACAAGAATGGTTCTGACAAGCCTA 85
Query 416 AGCAGCCACAGAGAGGTCTTGGAGTAGCACAATTGGAGAAGATTAGATTACATGGCGA-A 474
||||||| ||||||||||| || || || || || ||||||||||||||||| |||||
Sbjct 86 AGCAGCCTCAGAGAGGTCTCGGCGTCGCGCAGTTAGAGAAGATTAGATTACACGGCGAGT 145
Query 475 ATGAGTTGCAATAGCTTC-A-AC--A-----GTTAT-AACCCT--TCTTTGTATCCTCAG 522
|| | ||||| |||||| | || | |||| | |||| |||| || ||||
Sbjct 146 AT-AACTGCAACAGCTTCAATACTTACCCTTCTTATCATCCCTCAACTTTCAATAATCAG 204
Query 523 GAGGATGTGAGGATGCAAGGAGGATATTCATCCATACCATC 563
||||||||||||||||||||||||||| |||||||||||||
Sbjct 205 GAGGATGTGAGGATGCAAGGAGGATATCCATCCATACCATC 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5