BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20100.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480460 jgi|Araly1|480460|fgenesh2_kg.3__3161__AT2G20100.1 2121 0.0
> Ahg480460 jgi|Araly1|480460|fgenesh2_kg.3__3161__AT2G20100.1
Length=1474
Score = 2121 bits (1148), Expect = 0.0
Identities = 1361/1460 (93%), Gaps = 29/1460 (2%)
Strand=Plus/Plus
Query 35 AAACTAAAGCATCGAGAAACAACAAATCTTAAAATCTTTTCATATTCTCGGTTAGTAGAA 94
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 23 AAACTAAAGCATCGAGAAACAACAAATCTCAAAATCTTTTCATATTCT--TTTAGTAGAA 80
Query 95 ACTAGGAAAAGAGATGAATAGAGGAGTGTTGGAGAGTTCGCCGGTTCAACATCTCACGGC 154
|||| || | | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 81 ACTAAGAGAGGCGATGAATAGAGGAGTGTTGGAGAGTTCGCCGGTTCAACACCTCACGGC 140
Query 155 GGCTGGAAACCCTAATTGGTGGAATAATGTCAGCCGCGGCTTGAGGCCACCAACGCCGTT 214
||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||
Sbjct 141 GGCTGGAAACCCTAATTGGTGGAATAACGTCAGCGGCGGCTTGAGGCCACCACCACCGTT 200
Query 215 GATGAGTCACGAGCCGCCGTCTACCAC-CGCTTTTATTCCAAGtctcttgccaaacttct 273
||||||||| |||||||| |||| || | ||| | |||||||||||||||| | |||||
Sbjct 201 TATGAGTCACCAGCCGCCGCCTACAACTC-CTTATCTTCCAAGTCTCTTGCCGACCTTCT 259
Query 274 tctcttctccgacttcctcttca---tcttcttcaccttctttccctcctcctAATAGTA 330
|||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 260 TCTCTTCTCCAACTTCCTCTTCATCTTCTTCTTCACCTTCTTTGCCTCTTCCTAATAGTA 319
Query 331 ACCCTAACTTCTCTTCTTGGCTTGAAATGAGTGATCTGCCTCTTGATCAGCCATGGAGCC 390
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 320 ACTCTAACTTCTCTTCTTGGCTTGAAATGAGTGATCTGCCTCTTGACCAGCCATGGAACC 379
Query 391 TTAGTCAACTCCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTAGTCAACTCCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGA 439
Query 451 A-C--CATCATCATCATCAAAATCAACACCAAAGTTACCAAGCGAAGAGGATACAAAATT 507
| | |||||||||||||||||||||| ||| |||||||||| ||||| |||||| ||||
Sbjct 440 ACCATCATCATCATCATCAAAATCAACCCCATAGTTACCAAGAGAAGAAGATACAGAATT 499
Query 508 GGGAAGAACAAGTTTTGAGGCACCAAGCTTCCATGAAACAAGAGAGTAGTAATAATAATA 567
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 500 GGGAAGAACAAGTTTTGAGGCACCAAGCTTCCATGAAACAAGAGAGTAACAATACTAATG 559
Query 568 GTTATGGAATAATGTCCTCACCAAACTCACCTCCAAACAAATCTTGTGCTACAATT-ATC 626
||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| | |
Sbjct 560 GTTATAGAATAATGTCCTCACCAAACTCACCTCCAAACAAGTCTTGTGTTACAATTCA-C 618
Query 627 AACACCAATGAAGACAACAACAATAACATTCACAGTGGTCTTAACTTGTCCGAGTGTAAT 686
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 619 AACACCAATGAAGAAAACAACAATAACATTCACAATGGTCCTAACTTGTCCGAGTGTAAT 678
Query 687 AGCTCAGAGATGATTGGGTCTTCTTTTGCTAATAAGAAACCAAAACTTCAAGTTCCTTCA 746
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 679 AGCTCAGAGATTATTGGGTCTTCTTTTGCAAATAAGAAACCAAAACTTCAAGTTCCTTCA 738
Query 747 TCACAATCAACTCTCAAGGTGAGAAAGGAGAAACTTGGAGGCAGAATAGCATCTCTTCAC 806
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 739 TCACAATCGACTCTCAAGGTGAGAAAGGAGAAACTTGGAGGCAGAATTGCATCTCTTCAC 798
Query 807 CAGCTAGTATCTCCCTTTGGCAAGACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CAGCTAGTATCTCCCTTTGGCAAGACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGA 858
Query 867 TACATTAGATTCCTCCACAGTCAAATTGAGGCTTTAAGTCTACCATACTTTGGTACTCCC 926
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 859 TACATTAGATTCCTCCACAGTCAAATTGAGGCTTTAAGTCTACCATACTTTGCTACTCCC 918
Query 927 TCGAGGAACAATATGATGCACCA--A-CATGCACAAAGAAATATGAATGGTATATTTCCT 983
|||||||| |||||||||||||| | ||||||||| |||||||||| ||||||||||||
Sbjct 919 TCGAGGAATAATATGATGCACCACCAACATGCACAAGGAAATATGAACGGTATATTTCCT 978
Query 984 GAGGACCCTGGTCAGCTTGTGAATGAGTATTGCATGAAAAGAGGAGTTTCATTGTCATCG 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GAGGACCCTGGTCAGCTTGTGAATGAGTATTGCATGAAAAGAGGAGTTTCATTGTCATCG 1038
Query 1044 ACGGACAATCAAAAATCAAATCCTAACGAAGAACCGATGAAAGATTTGAGAAGTAGAGGG 1103
|||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1039 ACGGACGATCAAAAATCAAATCCTAACGAAGAACCGATGAAAGACTTAAGAAGTAG-GGG 1097
Query 1104 -CTTTGTCTTGTTCCCATCTCATGCACACTACAAGTTGGCAGCGACAATGGTGCCGACTA 1162
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1098 ACTTTGTCTTGTTCCAATCTCATGCACACTCCAAGTTGGCAGCGACAATGGCGCCGACTA 1157
Query 1163 TTGGGCTCCGGCGTTCGGAACCACTCTCCAGTGAACTATTCACTTTCTGTTATTTTATTT 1222
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1158 TTGGGCTCCGGCGTTCGGATTCACTCTCCAGTGAACTATTCACTTTCCGTTATTTTATTT 1217
Query 1223 TTGGTCAGCCaaaaaaaaaTAGTAGATGTTATAACATCATGAGCAACCAATCAATTGAGA 1282
| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1218 TGGGTCAGCCAAAAAAAT-TAGTAGATGTTATAACATCATGAGCAACCAATCTATTGAGA 1276
Query 1283 AAACATCAAAATGAGTTTCCAAATTTGATTGCTCATGATGCTATACTAAAACCGATTGGT 1342
||||| |||||||||||||||||||||||||||||||||||| ||| || || ||||||
Sbjct 1277 AAACAACAAAATGAGTTTCCAAATTTGATTGCTCATGATGCTGTACCAACACATATTGGT 1336
Query 1343 TTTGGCGTTTGGCCTTTGAGCATTTTCAGTTGACGAGTATGAGATGGCT-TGTTGAATCA 1401
||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||
Sbjct 1337 TTTGGCGTTTGGCCTTTGAACATTTTCTGTTGACGAGTATGAGATGG-TATGTTGAATCA 1395
Query 1402 TGTTTTTCTTACTTTAATAGGAAACTTTATTTATTCTCTTAA-TGTATATGT--T--G-- 1454
|||||| ||| |||||||||||||||||||| |||||||||| ||||||||| | |
Sbjct 1396 TGTTTT-CTTGCTTTAATAGGAAACTTTATTAATTCTCTTAAATGTATATGTGATATGAT 1454
Query 1455 G-TTCTATTTTAATTTTATT 1473
| ||||||||||||||||||
Sbjct 1455 GCTTCTATTTTAATTTTATT 1474
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 CTTCTTCTTTCCTTTTCTCCAAAAACTA 28
||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTTCCTTTTCTCCAAAAACTA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5