BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20110.2
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906360 jgi|Araly1|906360|Al_scaffold_0003_3488 1958 0.0
Ahg491858 jgi|Araly1|491858|fgenesh2_kg.7__1291__AT4G29000.1 736 0.0
Ahg317350 jgi|Araly1|317350|fgenesh1_pm.C_scaffold_3000366 63.9 5e-09
> Ahg906360 jgi|Araly1|906360|Al_scaffold_0003_3488
Length=1707
Score = 1958 bits (1060), Expect = 0.0
Identities = 1568/1788 (88%), Gaps = 136/1788 (8%)
Strand=Plus/Plus
Query 1 ATGGGAGAAGGTGAAGAAGGAGACAAATTCCCGCCAAAAACGGATGAGGTTACACAAGAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGGAGAAGGTGAAGAAGGAGACAAATTCCCGCCAAAAACGGATGAGGTTATACAAGAG 60
Query 61 TCTATGAAGTCGGCGAGGCAACTCGATTTTACT-G-GTGGTTC-TTC-CGATGT-TGAGC 115
||||||||||||||||||||||||||||||||| | |||| | ||| | | || | |
Sbjct 61 TCTATGAAGTCGGCGAGGCAACTCGATTTTACTGGTGTGGAGCATTCAC-A-GTCT-A-- 115
Query 116 ATTC-ACACTCTAATCA-AGCTTCTTCGATGGCTGCTGCATCAATCCCTTCACCGATTGT 173
| || || ||| | | | ||||||||| |||||||||||||||||||| |
Sbjct 116 A-TCAAC-CTCCGGTTACATCTTCTTCGACGGCTGCTGCATCAATCCCTT---C------ 164
Query 174 GACGGTTACGCGGCCAATAATTACCAGTCAGG--C-ACC----AC--CGACGGTGGCGAC 224
| ||||||||||||| |||||||| ||||| | ||| || |||||||||||||
Sbjct 165 GCCGGTTACGCGGCC---AATTACCACTCAGGCACGACCGGTTACAGCGACGGTGGCGAC 221
Query 225 TCCGATTCCACCGCCGCCACAATCTCAGGGCATCATCCTTCACGTCCCAATTAGACATCC 284
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 222 TCCGATTCCACCGCCGCCACAATCTCAGGG---CATCCTTCACGTCCCAATTAGACATCC 278
Query 285 GAG--G-C-C-CGAATCTCCGAATTCGATGCCAAGGCCTGCT-GGGGAAACTAGAGATGG 338
|| | | | | ||| | || || |||||||| | |||||| ||||||||||
Sbjct 279 -AGTTGACACTTGTTTCTTC-TCTT--TTG-TAAGGCCTG-TGGGGGAAGCTAGAGATGG 332
Query 339 AACCCCTCAGAAGAAGAAACAGTGTAACTGTAAACACTCACGGTGCTTGAAGCTGTATTG 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 AACCCCTCAGAAGAAGAAACAGTGTAACTGTAAACACTCACGGTGCTTGAAGCTGTATTG 392
Query 399 TGAATGTTTTGCATCTGGCACTTACTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAA 458
|||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||||
Sbjct 393 TGAATGCTTTGCATCTGGCTCTTATTGTGATGGTTGCAACTGTTTAAATTGTTTCAACAA 452
Query 459 CGTTGAAAATGAACCTGCGAGACGACAAGCGGTTGAATCAACTCTGGAACGGAATCCGAA 518
|||||||||||| || ||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 453 CGTTGAAAATGAGCCAGCGAGACGAGAAGCTATTGGATCAACTCTGGAACGGAATCCGAA 512
Query 519 TGCGTTCAGGCCAAAGATTGCTGCTAGTCCACATGGTGGACGAGATAACAGGGAGGAGGT 578
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 513 TGCGTTCAGGCCTAAGATTGCTGCTAGTCCACACGGCGGACGAGATAACAGGGAGGAGGT 572
Query 579 TGGTGACGTTGTGATGTTAGCGAGACACAACAAAGGCTGTCACTGCAAGAAATCCGGATG 638
|||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 573 TGGTGAAGTTGTGTTGTTAGGGAGACACAACAAAGGCTGTCACTGCAAGAAATCTGGATG 632
Query 639 TCTTAAGAAGTATTGTGAGTGCTTTCAAGCAAACATTCTTTGTTCTGAGAACTGCAAATG 698
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 633 TCTTAAGAAGTATTGTGAGTGTTTTCAAGCTAACATTCTTTGTTCTGAGAACTGCAAATG 692
Query 699 CTTGGATTGCAAAAACTTTGAAGGGAGTGAAGTTAGACAATCTCTTTTTCACGGTGAACA 758
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 693 CTTGGATTGCAAAAACTTTGAAGGAAGTGAAGTTAGACAATCTCTCTTTCACGGTGAACA 752
Query 759 TTCCCACAACTTGGCTTATCTTCAACACGCAAATGCTGCCATAACCGGAGCTATTGGTTC 818
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TTCCAACAACGTGGCTTATCTTCAACACGCAAATGCTGCCATAACCGGAGCTATTGGTTC 812
Query 819 CTCTGGCTTTGCATCTGCTCCACCTCCTAAGAGAAGGAAAGGTCAGGAGATTTTCTTCAA 878
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 813 CTCTGGCTTTGCATCTGCTCCAGCTCCTAAGAGAAGGAAAGGTCAGGAGATTTTTTTTAA 872
Query 879 CCAAGGAACCAAAGATTCATCCACTCATAGGCTTGGCCAGGCAAATAACGGAAGAACCAC 938
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 873 CCAAGGACCCAAAGATTCATCCACTCATAGGCTTGGCCAGGCAAATAGTGGAAGAACCAC 932
Query 939 ATCTTCGCAAACTGGTTCTCGTGCTGGAGGCAATGCGTCGTTAGGCCCATCCAAAGTTGT 998
|||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 933 ATCTCCGAAAACTGGTTCTCATGCTGGAGGCAATGCGTCGTTAGGCCCATCCAAAGTTGT 992
Query 999 ATATAAGTCTCTTTTGGCAAACATAATTAAACC-AATGGATGTGAAAGCACTATGTTCTG 1057
||||| |||||||||||| ||||||||||||| || ||||||||||||||| |||||||
Sbjct 993 ATATAGGTCTCTTTTGGCTGACATAATTAAACCGAA-GGATGTGAAAGCACTCTGTTCTG 1051
Query 1058 TTCTGGT-TGCTGTAGCTGGGGAAGCTGCAAAGACATTAACAGAA-AAACGGTTAGCAAA 1115
||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1052 TTCTGGTAT-CTGTAGCTGGGGAAGCTGCAAAGACATTAACAGAAGAAA-GGTTAGCAGA 1109
Query 1116 TCAGAAAGAAACTTCCGTAGCTTCTTCTGTGCAAGATCAAGGACAC-GTCAATAATAAAG 1174
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1110 TCAGAAAGAAACTTCCGTAGCTTCTTCTGTGCAAGATCAAGGACACAG-CAATAATAAAG 1168
Query 1175 CT---GAG----AAAT--CTG-GTTTAGAGGATT---C--A-AA-T--G--C-AGATGGC 1212
| ||| ||| ||| | | || || | | || | | | |||||||
Sbjct 1169 GTACCGAGGGTGAAAAAGCTGCGAGTGGAA-ATCAAGCTGAGAAATCTGGTCCAGATGGC 1227
Query 1213 TCCAAAGGGAGGTCACTATCTCCAGAAACTTTGGCATTGATGTGTGACGAACGGGACACA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TCCAAAGGGAGGTCACTATCTCCAGAAACTTTGGCATTGATGTGTGACGAACGGGACACA 1287
Query 1273 ATGTTAATGGTTGCAGCTTCACCTAATTGTTCGGTGGAGCCTACGTCACAGCTACCAAAC 1332
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 1288 ATGTTAATGGTTGCAGCTTCACCTAATTGTTCGGTGGAGCCTACCTCACAGCTTCCAGAT 1347
Query 1333 GGGCAAGACCAGGTTTATGCAGAACAAGAAAAAGTAGTATTAACCAAGTTCCGTGACTGC 1392
||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct 1348 GGGCAAGACCAGGTTTATGCAGAACAAGAGAAAGTAATATTAACCAGGTTCCGTGACTGC 1407
Query 1393 CTTAACCGAATAATCTCCTGTGGAGAAGTAAAAGTTTTTTGTTTGTTTGTTGCAGAATCA 1452
||||||||||| |||||||| ||||||||||||| | | |||
Sbjct 1408 CTTAACCGAATTATCTCCTGCGGAGAAGTAAAAG-------------------A-A-TCA 1446
Query 1453 AATTGTTCT-ATGTCAAGAATGGATCTAGATACACCTGTACAAAC-GACTGTCAGAATCG 1510
|||||| || |||||||||||||||||||||||||||||||| || | |||||| |||||
Sbjct 1447 AATTGT-CTTATGTCAAGAATGGATCTAGATACACCTGTACACACTG-CTGTCAAAATCG 1504
Query 1511 ACCCAGTGGTTCAACAA-GCTCCAGTTGCAAATGGAGTTTCACAAACCGCAAAGCAACCT 1569
||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1505 ACCCAGTGGTTGATCAAAGA-CCAGTTGCAAATGGAGTTTCACAAACCGCAAAGCAACCT 1563
Query 1570 TCCCAGCTAAACACAACAACACCAAACACATCCTCACAAACTGCAA-ATGGAGTTTCACA 1628
|||||||||| |||||||||| ||||| | | |||| | ||| | | || |
Sbjct 1564 TCCCAGCTAACCACAACAACAA-AAACA-A-CA--ACAA-CAACAACA---A----CA-A 1609
Query 1629 -AACGGCAAAGCAACCTTCCCAGCTaaccacaacaacaacaacaccaaacacaTCCTCAC 1687
||| || |||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1610 TAAC---AA--CAACA-----A-C-AACCACAACAACAACAACACCAAACACATCCTCAC 1657
Query 1688 AAACTCATCTTCATAAAACTCCAGCTTTGTCTGAGAAGAAAGACCTCT 1735
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 AAACTCATCTTCATAAAACTCCAGCTTTGTCTGAGAAGAAAGACCTCT 1705
Score = 56.5 bits (30), Expect = 8e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 1579 AAC-ACAACAACACCAAACACATCCTCACAAACT 1611
||| ||||||||||||||||||||||||||||||
Sbjct 1629 AACAACAACAACACCAAACACATCCTCACAAACT 1662
> Ahg491858 jgi|Araly1|491858|fgenesh2_kg.7__1291__AT4G29000.1
Length=2630
Score = 736 bits (398), Expect = 0.0
Identities = 732/886 (83%), Gaps = 52/886 (6%)
Strand=Plus/Plus
Query 259 ATCCTTCACGTC-CCAATTAGACATCCGAGGCCCGAATCTCC-GAA-TTCGATG-CCAAG 314
|||||| ||| | ||||| || ||||| | || |||||||| || | || | |||||
Sbjct 649 ATCCTTAACG-CGCCAATCAGGCATCCAAAACCGGAATCTCCAAAAGCTAGAGGTCCAAG 707
Query 315 GCCTGCTGGGGAAACTAGAGATGGAACCCCTCAGAAGAAGAAACAGTGTAACTGTAAACA 374
|||| || |||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 708 GCCTATTGTGGAAGGTAGAGATGGAACTCCTCAGAAGAAGAAGCAGTGTAACTGTAAACA 767
Query 375 CTCACGGTGCTTGAAGCTGTATTGTGAATGTTTTGCATCTGGCACTTACTGTGATGGTTG 434
|||||| |||||||| ||||| |||||||| |||||||| || || || ||||| |||||
Sbjct 768 CTCACGCTGCTTGAAACTGTACTGTGAATGCTTTGCATCCGGAACATATTGTGACGGTTG 827
Query 435 CAACTGTGTAAATTGTTTCAACAACGTTGAAAATGAACCTGCGAGACGACAAGCGGTTGA 494
||||||||||||||||||||||| ||||| ||||||||||| |||||| |||| || ||
Sbjct 828 TAACTGTGTAAATTGTTTCAACAATGTTGATAATGAACCTGCAAGACGAGAAGCTGTGGA 887
Query 495 ATCAACTCTGGAACGGAATCCGA-ATGCGTTCAGGCC-AAAGATTGCT-GCTAGTCCACA 551
| |||||||||| |||||||| | |||||||||||| ||| |||||| || ||||||||
Sbjct 888 AGCAACTCTGGAGCGGAATCC-ATTTGCGTTCAGGCCTAAA-ATTGCTAGC-AGTCCACA 944
Query 552 TGGTG-GACGAGATAACAGGGAGGAGGTTGGTGACGTTGTGATGTTAGCGAGACACAACA 610
||||| | || ||||| |||||||| ||||||| |||||| |||||| || ||| ||||
Sbjct 945 TGGTGTG-CGGGATAAAAGGGAGGACATTGGTGAAGTTGTGTTGTTAGGGAAACATAACA 1003
Query 611 AAGGCTGTCACTGCAAGAAATCCGGATGTCTTAAGAAGTATTGTGAGTGCTTTCAAGCAA 670
|||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1004 AAGGATGCCACTGCAAGAAATCGGGATGCCTTAAGAAGTATTGTGAGTGCTTTCAAGCAA 1063
Query 671 ACATTCTTTGTTCTGAGAACTGCAAATGCTTGGATTGCAAAAACTTTGAAGGGAGTGAAG 730
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1064 ACATTCTTTGTTCTGAGAACTGCAAATGCTTGGATTGCAAAAACTTTGAAGGAAGTGAAG 1123
Query 731 TTAGACAATCTCTTTTTCACGGTGAACATTCCCACAACTTGGCTTATCTTCAACA--C-G 787
|||||| |||| ||||||||||||||| || || || |||||||||||||||| | |
Sbjct 1124 AGAGACAAGCTCTGTTTCACGGTGAACATGCCAACCACATGGCTTATCTTCAACAAGCAG 1183
Query 788 CAAATGCTGCCATAACCGGAGCTATTGGTTCCTCTGGCTTTGCATC-TGCTCCACCTCCT 846
||||||| ||||| || |||||| |||||||||| |||||||| || | ||||| | |||
Sbjct 1184 CAAATGCAGCCATTACTGGAGCTGTTGGTTCCTCCGGCTTTGC-TCCTTCTCCAGCACCT 1242
Query 847 AAGAGAAGGAAAGGTCAGGAGATTTTCTTCAACCAAGGAACCAAAGATTCATCCACTCAT 906
||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | | |
Sbjct 1243 AAGAGAAGGAAAGGTCAAGAGATTTTGTTCAACCAAGCAACCAAAGATTCATCTAGACTT 1302
Query 907 AGGC---TTGGCCA-GGC-AAATAACGGAAGA---A-----CCA-C---A---TC-T-TC 944
||| || ||| || ||||| |||||| | ||| | | || | ||
Sbjct 1303 -GGCCAGTTT-CCACGGGTAAATAGTGGAAGAGCTAGTGGACCAACCTCAGGCTCATCTC 1360
Query 945 -G-CAAACTGGTTCTCGTGCTGGAGGCAATGCGTCGTTAGGC-CCATCCAAAGTT-GTAT 1000
| || ||| |||||||||||| |||||||| |||| || | ||||| |||||| ||||
Sbjct 1361 CGTCAC-CTGTTTCTCGTGCTGGTGGCAATGCATCGTCAG-CTCCATC-AAAGTTTGTAT 1417
Query 1001 ATAAGTCTCTTTTGGCAAACATAATTAAACCA-ATGGATGTGAAAGCACTATGTTCTGTT 1059
||| ||| ||||| ||| | ||||| |||| ||| |||| | |||||| || ||||||
Sbjct 1418 ATAGGTCCCTTTTAGCAGATATAATCCAACCGCATG-ATGTTAGAGCACTTTGCTCTGTT 1476
Query 1060 CTGGTTGCTGTAGCTGGGGAAGCTGCAAAGACATTAACAGA-AAAA 1104
| || |||||||| || ||||| |||||||||| |||||| ||||
Sbjct 1477 TTAGTCGCTGTAGCCGGAGAAGCAGCAAAGACATCAACAGATAAAA 1522
> Ahg317350 jgi|Araly1|317350|fgenesh1_pm.C_scaffold_3000366
Length=1836
Score = 63.9 bits (34), Expect = 5e-09
Identities = 59/70 (84%), Gaps = 6/70 (9%)
Strand=Plus/Plus
Query 361 TGTAACTGTAA-ACACTCACGGTGCTTGAAGCTGTATTGTGAATGTTTTGCAT-CTGGCA 418
||||| ||||| | | |||| ||||||||||||||||||||||||||||| | ||||
Sbjct 1297 TGTAAATGTAAGA-AATCACAATGCTTGAAGCTGTATTGTGAATGTTTTGC-TGCTGGT- 1353
Query 419 CT-TACTGTG 427
|| |||||||
Sbjct 1354 CTATACTGTG 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5