BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20120.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480456 jgi|Araly1|480456|fgenesh2_kg.3__3157__AT2G20120.1 1677 0.0
> Ahg480456 jgi|Araly1|480456|fgenesh2_kg.3__3157__AT2G20120.1
Length=1137
Score = 1677 bits (908), Expect = 0.0
Identities = 1079/1156 (93%), Gaps = 33/1156 (3%)
Strand=Plus/Plus
Query 5 TCAAGTTGGAGTTAGCTA---AGCTTAGC--TA--CA-A-AAGAACAGTCGCCGGCAAAA 55
|||||||||||||||||| ||||| || || || | ||||||||||||||||||||
Sbjct 1 TCAAGTTGGAGTTAGCTAGCTAGCTT-GCTTTATGCACAGAAGAACAGTCGCCGGCAAAA 59
Query 56 GTCTCAGCCTTTTTCCTCTCCGCCGTTCACAGTTCACCGGCATTTCTCTCTTCTTTCTTT 115
|||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||
Sbjct 60 GTCTCAACCTTTTTCCTCTCCGCCGTTCACA-TTCACCTGCATTTCTCCCTTCTTTCTTC 118
Query 116 TTCTCCGACTAGATTTCCTTGTCTCTTTG-GTTTCTTGGCGATGGGAGACGAGAAGCCGG 174
||||||| ||||||||| ||||| | || |||||| |||||||||||||||||||||||
Sbjct 119 TTCTCCGGCTAGATTTCATTGTCGC-CTGAGTTTCTCGGCGATGGGAGACGAGAAGCCGG 177
Query 175 TGATTGTTATGGCCAATCGAGAAAGAGATCGAGAGCTTCTGATTCCCGTCGCTGATTCCG 234
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGATTGTGATGGCCAATCGTGAAAGAGATCGAGAGCTTCTGATTCCCGTCGCTGATTCCG 237
Query 235 GCGACAAAGACGACGGttcttcttcgaagccttcttcttcttcctctgcttcttcttctt 294
||||||||||||| ||| ||||||| |||||||||||||||| || | | | |||||||
Sbjct 238 GCGACAAAGACGATGGTCCTTCTTCAAAGCCTTCTTCTTCTT-CT-T-C--C-TCTTCTT 291
Query 295 cGCATCAATCCAGCCACGAGACTTTAAGCTTGTTCATTAGGGGCTGGGCGTCAAAGAAGT 354
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 292 CGCATCAATCCAGCCACGAGACTTTTAGCTTGTTCATTAGGGGTTGGGCGTCAAAGAAGT 351
Query 355 TCATGACAGGCTGTGTTATCCTACTTCCTATTGCAATTACTTTCTATATAACATGGTGGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCATGACAGGCTGTGTTATCCTACTTCCTATTGCAATTACTTTCTATATAACATGGTGGT 411
Query 415 TTATTCACTTTGTCGATGGATTCTTCTCTCCAATATATGCACAACTTGGAATCAACGTAT 474
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTATTCACTTTGTTGATGGATTCTTCTCTCCAATATATGCACAACTTGGAATCAACGTAT 471
Query 475 TTGGTTTCGGTTTTTTGACTTCCATTGCATTCATCTTCTTGGTTGGGGTGTTCATGTCTT 534
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 472 TTGGTTTCGGTTTTTTGACTTCCATTGCATTCATCTTCTTGGTCGGGGTGTTCATGTCTT 531
Query 535 CGTGGTTGGGGGCATCGGTTCTGAACTTGGGAGAGTGGTTTATCAAGCGGATGCCGTTTG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 532 CGTGGTTGGGGGCATCGGTTCTGAACTTGGGAGAGTGGTTTATCAAGCGGATGCCATTTG 591
Query 595 TTCGTCACATCTACAACGCCTCCAAGCAAATCAGCACTGCCATATCGCCTGATCAAAATA 654
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 592 TTCGTCACATCTACAACGCCTCCAAGCAAATCAGCACGGCCATATCGCCTGATCAAAATA 651
Query 655 CACAAGCTTTCAAGGAAGTTGCAATCATCAGGCATCCCCGTGTAGGTGAATACGCATTTG 714
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CACAAGCATTCAAGGAAGTTGCAATCATCAGGCATCCCCGTGTAGGTGAATACGCATTTG 711
Query 715 GCTTCATTACATCAACTGTTGTTCTCCAGAACTATCCAACCGAGGAGGAACTTTGCTGTG 774
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 712 GCTTCATTACATCAACTGTTGTTCTCCAGAACTACCCAACCGAGGAGGAACTTTGCTGTG 771
Query 775 TATACGTTCCCACGAACCACCTTTACATTGGAGATCTACTACTTGTCAACAGTAATGACG 834
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 772 TATACGTTCCCACGAACCACCTTTACATTGGAGATATACTACTTGTCAACAGTAATGACG 831
Query 835 TTATCAGGCCAAACCTCTCGGTCCGGGAAGGAATTGAGATTGTTGTTTCGGGTGGAATGT 894
||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 832 TTATCAGGCCAAATCTCTCTGTCCGGGAAGGAATAGAGATTGTTGTCTCGGGTGGAATGT 891
Query 895 CAATGCCACAGATTCTGTCCACTGTTGATAAACCTTTGGCCTCGATTGATAGAGCTACAA 954
||||||| |||||||| || ||| |||||||||||| | |||||||||||||||||||||
Sbjct 892 CAATGCCGCAGATTCTATCAACTCTTGATAAACCTTCGTCCTCGATTGATAGAGCTACAA 951
Query 955 GCTTATAGTTTAAAGCAGAAGAATTTCTCTTTTTGTTGGGATTTGTTGATGAGTGTTTGT 1014
||||||||||| || ||||||| || |||||||||| |||||||||||||||||| |||
Sbjct 952 GCTTATAGTTTCAACCAGAAGA-TTA-TCTTTTTGTTAGGATTTGTTGATGAGTGTGTGT 1009
Query 1015 GTGTCTCTGGAGTCTCTTCAATATTGTTGTAATATTTCATGTGT-TT-ACAA--GTGTAT 1070
||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||
Sbjct 1010 CTGTCTCTGGAGTCTCTTCAATATTGTTGTAATATTTCATTTGTGTTCACAAAAGTGTAT 1069
Query 1071 AATGTAAGGTAGGtctctctctccctctctTCTTAGATATGAATCTTTTTCCTGAAAATA 1130
|||||||| ||||||||||||| ||| | |||||||||||||| |||||||||||
Sbjct 1070 AATGTAAGATAGGTCTCTCTCT---TCT-T----AGATATGAATCTTTCTCCTGAAAATA 1121
Query 1131 TTATTCTTCTTGAAAA 1146
||||| ||||||||||
Sbjct 1122 TTATTTTTCTTGAAAA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5