BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20140.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480455 jgi|Araly1|480455|fgenesh2_kg.3__3156__AT2G20140.1 2326 0.0
Ahg491854 jgi|Araly1|491854|fgenesh2_kg.7__1287__AT4G29040.1 1738 0.0
Ahg931239 jgi|Araly1|931239|scaffold_303696.1 169 7e-41
Ahg915082 jgi|Araly1|915082|Al_scaffold_0009_51 169 7e-41
Ahg936798 jgi|Araly1|936798|scaffold_500989.1 163 3e-39
> Ahg480455 jgi|Araly1|480455|fgenesh2_kg.3__3156__AT2G20140.1
Length=1573
Score = 2326 bits (1259), Expect = 0.0
Identities = 1364/1415 (96%), Gaps = 6/1415 (0%)
Strand=Plus/Plus
Query 21 AGAGAGACGAAGC-ACAATGGGTCAAGGACCTTCCGGCGGATTGAATCGGCAAGGAGATC 79
||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 29 AGAGAGACGAAGCAAAAATGGGTCAAGGACCATCCGGCGGATTGAATCGGCAAGGAGATC 88
Query 80 GGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCACCACCTGCTC 139
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 89 GGAAACCAGATGGTGGTGACAAGAAAGAGAAGAAGTTCGAACCAGCCGCACCACCTGCTC 148
Query 140 GTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGCGAGATTGCCGACGG 199
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 149 GTGTAGGGAGGAAGCAACGGAAGCAAAAAGGACCTGAAGCGGCGGCGAGATTGCCGACGG 208
Query 200 TGACTCCTTCTACTAAATGTAAGCTTCGATTGCTGAAATTGGAGCGAATCAAGGACTATT 259
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 209 TGACTCCTTCTACTAAATGTAAGCTTCGATTGCTTAAACTGGAGCGAATCAAGGACTATT 268
Query 260 TGCTTATGGAGGAAGAGTTCGTAGCGAATCAGGAGAGATTGAAACCTCAGGAAGAGAAAG 319
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 269 TGCTTATGGAGGAAGAGTTTGTGGCGAATCAGGAGAGATTGAAACCTCAGGAAGAGAAAG 328
Query 320 CTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGCAATC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGCAATC 388
Query 380 TTGAAGAGCTTATTGATGAGAATCACGCCATTGTTTCTTCTTCGGTTGGTCCTGAGTACT 439
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 389 TTGAAGAGCTTATTGATGAGAATCACGCCATTGTTTCTTCTTCTGTTGGTCCTGAGTATT 448
Query 440 ACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGA 499
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 449 ACGTTGGGATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGTTGCTCCATTTTGA 508
Query 500 TGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAATGGTGT 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAATGGTGT 568
Query 560 CTGTGATGAAAGTGGAGAAGGCTCCTTTGGAGTCATATGCTGACATTGGAGGTTTAGAAG 619
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 569 CTGTGATGAAAGTGGAGAAAGCTCCTTTGGAATCATATGCTGACATTGGAGGTTTAGAAG 628
Query 620 CTCAGATTCAGGAGATTAAGGAAGCTGTTGAGTTACCTTTAACACATCCCGAGCTGTATG 679
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 629 CTCAGATTCAGGAGATCAAGGAAGCTGTTGAGCTACCTTTAACACATCCCGAGTTGTATG 688
Query 680 AAGATATTGGAATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAGGCACTGGGA 739
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AAGATATCGGTATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAGGCACTGGGA 748
Query 740 AGACATTGCTTGCTAAGGCAGTGGCAAATTCTACTTCAGCTACTTTCTTGCGTGTTGTCG 799
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 749 AGACATTGCTTGCTAAGGCAGTGGCGAATTCTACATCAGCTACTTTCTTGCGTGTTGTCG 808
Query 800 GTAGTGAACTGATTCAGAAGTATTTAGGAGATGGTCCCAAGCTTGTGAGGGAACTTTTCA 859
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 809 GTAGTGAACTGATTCAGAAGTATTTGGGAGATGGTCCCAAGCTTGTGAGGGAGCTTTTCA 868
Query 860 GGGTTGCTGATGACCTTTCTCCTTCTATTGTTTTCATAGACGAGATTGATGCTGTTGGCA 919
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 869 GGGTTGCCGATGACCTTTCACCATCTATTGTTTTCATAGACGAGATTGATGCTGTTGGCA 928
Query 920 CCAAGCGGTATGACGCAAACTCAGGTGGGGAACGTGAAATCCAAAGAACCATGTTGGAAC 979
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 929 CCAAGCGGTATGACGCAAACTCAGGTGGTGAACGTGAAATCCAAAGAACCATGTTGGAAC 988
Query 980 TACTGAACCAGCTTGATGGGTTTGATTCAAGAGGAGATGTTAAGGTTATTCTCGCGACAA 1039
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 989 TACTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTAATTCTCGCGACAA 1048
Query 1040 ACAGGATCGAGAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGAAAATCG 1099
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 ACAGAATCGAAAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGAAAATCG 1108
Query 1100 AATTCCCTCTTCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCAAAGA 1159
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1109 AGTTCCCTCTTCCAGATATCAAAACAAGGAGACGTATCTTCCAGATACACACATCAAAGA 1168
Query 1160 TGACTTTGGCTGAAGATGTGAACTTAGAAGAGTTTGTAATGACAAAAGACGAGTTCTCAG 1219
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1169 TGACTTTGGCCGAAGATGTGAACTTAGAAGAGTTTGTAATGACGAAAGACGAGTTCTCAG 1228
Query 1220 GAGCTGATATAAAGGCAATATGCACAGAAGCTGGTCTGCTTGCTCTTAGAGAGCGTCGGA 1279
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1229 GAGCTGATATAAAGGCGATATGTACAGAAGCTGGTCTGCTTGCTCTTAGAGAGCGTCGAA 1288
Query 1280 TGAAAGTGACGCATGTGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAGAAGAAAG 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TGAAAGTGACGCATGTGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAGAAGAAAG 1348
Query 1340 AAGGAGTTCCTGAAGGTCTTTACATGTGAATGATGCACAA-CGACTGgtttcaatctctt 1398
||||||| |||||||||||||||||||||| || |||||| ||||| ||||||||||||
Sbjct 1349 AAGGAGTCCCTGAAGGTCTTTACATGTGAAAGAAGCACAAACGACTA-TTTCAATCTCTT 1407
Query 1399 ttttcgagtttgctctctttttctccgtttttctg 1433
||| ||||||||||||||||||||| ||||||||
Sbjct 1408 TTT-CGAGTTTGCTCTCTTTTTCTC--TTTTTCTG 1439
> Ahg491854 jgi|Araly1|491854|fgenesh2_kg.7__1287__AT4G29040.1
Length=1599
Score = 1738 bits (941), Expect = 0.0
Identities = 1219/1354 (90%), Gaps = 16/1354 (1%)
Strand=Plus/Plus
Query 21 AGAG-AGACGAAGCA-CAATGGGTCAAGGACCTTCCGGCGGATTGAATCGGCAAGGAGAT 78
|||| ||| ||| || | |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 47 AGAGAAGA-GAATCATC-ATGGGTCAAGGACCATCCGGAGGATTGAATCGGCAAGGAGAT 104
Query 79 CGGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCACCACCTGCT 138
||||| || |||||||| || |||||||||||||||||||| || || |||||||| |||
Sbjct 105 CGGAAGCCTGATGGTGGCGATAAGAAGGAGAAGAAGTTCGAGCCGGCGGCACCACCGGCT 164
Query 139 CGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGCGAGA-TTGCCGAC 197
|||||||||||||||||||||||||||||||| || || |||||||||||| || |||||
Sbjct 165 CGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTT-CCGAC 223
Query 198 GGTGACTCCTTCTACTAAATGTAAGCTTCGATTGCTGAAATTGGAGCGAATCAAGGACTA 257
||||||||| |||||||| |||||||| || || |||||||||||||| |||||||| ||
Sbjct 224 GGTGACTCCGTCTACTAAGTGTAAGCTCCGGTTACTGAAATTGGAGCGGATCAAGGATTA 283
Query 258 TTTGCTT-ATGGAGGAAGAGTTCGTAGCGAATCAGGAGAGATTGAAACCTCAGGAAGAGA 316
|||| || |||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct 284 TTTG-TTGATGGAGGAAGAGTTTGTTGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGA 342
Query 317 AAGCTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGCA 376
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 343 AAGCTGAAGAAGATAGATCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGA 402
Query 377 ATCTT-GAAGAGCTT-ATTGATGAGAATCACGCCATTGTTTCTTCTTCGGTTGGTCCTGA 434
|| || |||||| || ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 403 AT-TTGGAAGAG-TTGATTGATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGGCCTGA 460
Query 435 GTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTAT 494
|||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || || ||
Sbjct 461 GTACTATGTTGGGATTTTGTCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGAT 520
Query 495 TTTGATGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAAT 554
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 521 TTTGATGCATAATAAGGTTCTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAAT 580
Query 555 GGTGTCTGTGATGAAAGTGGAGAAGGCTCCTTTGGAGTCATATGCTGACATTGGAGGTTT 614
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 581 GGTGTCTGTGATGAAAGTTGAGAAGGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTT 640
Query 615 AGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAG-TTACCTTTAACACATCCCGAGC 673
||||||||||||||||||||||||||||||||||||| || ||||| || ||||| |||
Sbjct 641 AGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAGCTT-CCTTTGACTCATCCTGAGT 699
Query 674 TGTATGAAGATATTGGAATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAGGCA 733
|||||||||||||||| ||||||||||| || |||||||| |||||||||||||| || |
Sbjct 700 TGTATGAAGATATTGGTATTAAGCCACCTAAGGGTGTGATTTTGTATGGTGAGCCTGGAA 759
Query 734 CTGGGAAGACATTGCTTGCTAAGGCAGTGGCAAATTCTACTTCAGCTACTTTCTTGCGTG 793
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| | |
Sbjct 760 CTGGGAAGACATTGCTTGCTAAGGCGGTGGCGAATTCTACATCAGCTACTTTCTTGAGAG 819
Query 794 TTGTCGGTAGTGAACTGATTCAGAAGTATTTAGGAGATGGTCCCAAGCTTGTGAGGGAAC 853
|||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 820 TTGTTGGTAGTGAGCTGATTCAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGGGAGC 879
Query 854 TTTTCAGGGTTGCTGATGACCTTTCTCCTTCTATTGTTTTCATAGACGAGATTGATGCTG 913
||||||| ||||| ||||||||||| || || ||||| |||||||| ||||||||||||
Sbjct 880 TTTTCAGAGTTGCCGATGACCTTTCACCATCAATTGTCTTCATAGATGAGATTGATGCTA 939
Query 914 TTGGCACCAAGCGGTATGACGCAAACTCAGGTGGGGAACGTGAAATCCAAAGAACCATGT 973
|||| ||||||||||||||||| ||||||| || |||||||| ||||||||||| ||||
Sbjct 940 TTGGTACCAAGCGGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGT 999
Query 974 TGGAACTACTGAACCAGCTTGATGGGTTTGATTCAAGAGGAGATGTTAAGGTTATTCTCG 1033
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 1000 TGGAACTTCTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTG 1059
Query 1034 CGACAAACAGGATCGAGAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGA 1093
| |||||||| ||||||| ||||||||||||||| ||| |||| || ||||| || ||||
Sbjct 1060 CAACAAACAGAATCGAGACTCTTGACCCGGCACTGCTTCGACCTGGACGGATTGATAGGA 1119
Query 1094 AAATCGAATTCCCTCTTCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACAT 1153
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACAT 1179
Query 1154 CAAAGATGACTTTGGCTGAAGATGTGAACTTAGAAGAGTTTGTAATGACAAAAGACGAGT 1213
| ||||||||| | | |||||||| ||| | ||||||||||| ||||||||||||||||
Sbjct 1180 CGAAGATGACTCTCTCGGAAGATGTAAACCTGGAAGAGTTTGTGATGACAAAAGACGAGT 1239
Query 1214 TCTCAGGAGCTGATATAAAGGCAATATGCACAGAAGCTGGTCTGCTTGCTCTTAGAGAGC 1273
|||||||||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||
Sbjct 1240 TCTCAGGAGCAGATATCAAGGCTATATGCACCGAGGCTGGTCTACTTGCTCTGAGGGAGC 1299
Query 1274 GTCGGATGAAAGTGACGCATG-TGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAG 1332
|||| ||||| ||||||||| || | |||||||| ||||||||||||||||||||||||
Sbjct 1300 GTCGTATGAAGGTGACGCATCCTG-ATTTCAAGAAAGCGAAGGAGAAGGTTATGTTCAAG 1358
Query 1333 AAGAAAGAAGGAGTTCCTGAAGGTCTTTACATGT 1366
||||||||||| || |||||||| ||||||||||
Sbjct 1359 AAGAAAGAAGGTGTCCCTGAAGGCCTTTACATGT 1392
> Ahg931239 jgi|Araly1|931239|scaffold_303696.1
Length=344
Score = 169 bits (91), Expect = 7e-41
Identities = 107/115 (93%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 71 AAGGAGATCGGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCAC 130
||||||||||||||||||||| ||| || |||||||||||||||||||||| || | |||
Sbjct 52 AAGGAGATCGGAAACCAGATGATGGTGACAAGAAGGAGAAGAAGTTCGAACGAGTCTCAC 111
Query 131 CACCTGCTCGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGC 185
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 112 CACCTGCTCGTGTTGGGAGGAAGCAACGGAAGCAGAAAGGACTTGAAGCGGCGGC 166
> Ahg915082 jgi|Araly1|915082|Al_scaffold_0009_51
Length=174
Score = 169 bits (91), Expect = 7e-41
Identities = 107/115 (93%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 71 AAGGAGATCGGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCAC 130
||||||||||||||||||||| ||| || |||||||||||||||||||||| || | |||
Sbjct 32 AAGGAGATCGGAAACCAGATGATGGTGACAAGAAGGAGAAGAAGTTCGAACGAGTCTCAC 91
Query 131 CACCTGCTCGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGC 185
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 92 CACCTGCTCGTGTTGGGAGGAAGCAACGGAAGCAGAAAGGACTTGAAGCGGCGGC 146
> Ahg936798 jgi|Araly1|936798|scaffold_500989.1
Length=214
Score = 163 bits (88), Expect = 3e-39
Identities = 106/115 (92%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 71 AAGGAGATCGGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCAC 130
||||||| ||||||||||||| ||| || |||||||||||||||||||||| || | |||
Sbjct 52 AAGGAGACCGGAAACCAGATGATGGTGACAAGAAGGAGAAGAAGTTCGAACGAGTCTCAC 111
Query 131 CACCTGCTCGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGC 185
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 112 CACCTGCTCGTGTTGGGAGGAAGCAACGGAAGCAGAAAGGACTTGAAGCGGCGGC 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5