BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20142.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906356 jgi|Araly1|906356|Al_scaffold_0003_3484 760 0.0
Ahg906357 jgi|Araly1|906357|Al_scaffold_0003_3485 708 0.0
> Ahg906356 jgi|Araly1|906356|Al_scaffold_0003_3484
Length=480
Score = 760 bits (411), Expect = 0.0
Identities = 457/480 (95%), Gaps = 0/480 (0%)
Strand=Plus/Plus
Query 476 ATGTTGGTGAATGGAATAGCTCGGGAAATCGAGAACAAACTGCTAAGAGCCTCAAGAACG 535
||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 1 ATGTTGGTGAATGAAATAGCTCGGGAAATCGAAAACAAGCTGCTAAGAGCCTCACGAACA 60
Query 536 AAGGTTATGATTGAGTGGTCTTTAGTCATCACCAACCTCATGTTGGAGATACCTTCTTCT 595
|||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 61 AAGGTTATAATTGAGTGGTCTCTAGTCATCACAAACCTCATGTTGGAGATAGCTTCTTCT 120
Query 596 GTTTTCGACCAGATCTCCTCTGCACATAAACCTTTATATGCATTGGCTGCAATGTCAATG 655
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 121 GTTTTCGACCAGATCTCCTCTGCACATAAACCTTCATACGCATTGGCTGCAATGTCAATG 180
Query 656 TCATTGTTATCATGTCTACTTTGCATTGTAGATCTCTTACACAAAGGCAGAGTTGACAGA 715
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 181 TCATTGTTATCATGTCTACTTTGCATCATAGATCTCTTACACAAAGGCAGAGTTGAGAGA 240
Query 716 GTTGTGTGGAAGTGGACTTGGCCCATTCCTTGGTTTCACTATCAAACTCAAAGATCAAAC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGTGTGGAAGTGGACTTGGCCCATTCCTTGGTTTCACTATCAAACTCAAAGATCAAAC 300
Query 776 AGATTTGGTAGTTTTCCAGAGATGCTAGGCTTGGTTTGTGCCTTGTGCCAAACAACTATC 835
||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 301 AGATTTGGTAGCTTTCCAGAGATGCTTGGCTTGGTTTGCGCCTTGTGCCAAACGACTATC 360
Query 836 ACTGCCGTTAACTATTCATTCATCACACGTAGAGATGATACTCCCATCAAATTCTCGGTT 895
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ACTGCCGTTAACTATTCATTCATCACACGTAGAGATGACACTCCCATCAAATTCTCGGTT 420
Query 896 TGGCCAATCATGTTTGCGCTAGGTTTACTTTGCACTTTGTTGATTAAAAGATTTAGATAA 955
|||||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 421 TGGCCAATCATGTTTGCGTTAGGTTTACTTTGTACTTTGTTGATCAAAAGATCTAGATAA 480
> Ahg906357 jgi|Araly1|906357|Al_scaffold_0003_3485
Length=504
Score = 708 bits (383), Expect = 0.0
Identities = 418/435 (96%), Gaps = 2/435 (0%)
Strand=Plus/Plus
Query 32 ATGAAACACGATGTGTTCATAAGTTTCAGGAG-CAAAGACACTCGTGACAACTTCGTAAG 90
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 1 ATGAAACACGATGTGTTCATAAGTTTCAGG-GCCAAAGACACTCGTGACAACTTCGTGAG 59
Query 91 CCATCTCTGTGGCTGTCTACGTAGGAAACGGATCAAAACCTTCTTGTATGACGAACTACC 150
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 60 CCATCTCTGTGGCTGTCTACGTAGGAAGCGGATCAAAACCTTCTTATATGACGAACTACC 119
Query 151 AGCTGACGAGAGGTATGAAGAGTCGTTAAAAGCAATTGAAGTATCGAAAATTTCAGTCAT 210
||||| ||||| || |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 120 GGCTGAAGAGAGATACGAAGAGTCGTTAAAAGCAATCGAAGTATCGAGAATTTCAGTCAT 179
Query 211 TGTGTTCTCGGAAAACTTTGGGGATTCGAGATGGTGTTTAGATGAAGTTGTAGCCATCTT 270
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 TGTTTTCTCGGAAAACTTTGGGGATTCGAAATGGTGTTTAGATGAAGTTGTAGCCATCTT 239
Query 271 GAAATGCAAAGAAAAGTTTGGTCAGATTGTGATACCTGTCCTTTACCATGTTGATCCTCT 330
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GAAATGCAAAGAAAAGTTTGGTCAGATTGTGATACCTGTCCTTTACCATGTGGATCCTCT 299
Query 331 CGACATTGAAAATCAGACAGGAAGTTTTGGAGATGCCTTTGCTAAGCGACGGGATAAAGC 390
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 CGACATTGAAAATCAGACAGGAAGTTTTGGAGATGCCTTTGCTAAGCGACGGGATATAGC 359
Query 391 CGAACAGCTTCAAGAATGGAAAGATAGTTTTACAGAAGCCATTAACCTCCCTGGATGGAG 450
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CGAACAGCTTCAAGAATGGAAAGATGGTTTTACAGAAGCCATTAACCTCCCTGGATGGAG 419
Query 451 TACTGCTTATTTGAG 465
|||||| ||||||||
Sbjct 420 TACTGCCTATTTGAG 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5