BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20160.1
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931362 jgi|Araly1|931362|scaffold_303819.1 545 8e-155
Ahg484224 jgi|Araly1|484224|fgenesh2_kg.5__216__AT2G03190.1 287 5e-77
> Ahg931362 jgi|Araly1|931362|scaffold_303819.1
Length=512
Score = 545 bits (295), Expect = 8e-155
Identities = 410/462 (89%), Gaps = 22/462 (5%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAAGAAGATTGTGTTGACTAGCTCCGATGATGAATGTTTTGAGATTGACGAA 60
||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 22 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 81
Query 61 GCGGTGGCTCGTAAGAT-GCAGATGGTAGCGCACATGATCGATGACGATTGCGCCGATAA 119
|||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 82 GCGGTGGCTCGTAA-ATCGCAGATCATAGCGCACATGATCGATGAAGATTGCGCCGATAA 140
Query 120 AGCAATCCGGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AGCAATCCTGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 200
Query 180 GAAACACGTTGATGATGTTGA-AGC----CAA-GAATGAGTTCGTGA---CTTGGGACGC 230
||||||||||||||||||||| || ||| ||||||| |||||| ||||||||||
Sbjct 201 GAAACACGTTGATGATGTTGATAGTGAAGCAAAGAATGAGCTCGTGATGACTTGGGACGC 260
Query 231 AGAGTTCGTGAAAAACATTGATATGGATACACTCTTCAAACTCCTTGACGCTGCTGACTA 290
||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 261 AGAGTTCATGAAAAACATTGATATGGAAACAGTCTTCAAACTCCTTAACGCTGCTGACTA 320
Query 291 TCTCATCGTCATAGGTCT-CAAGAATCTCATT-GCC-CAGGCCATTGCAGATTACACTGC 347
||||| ||||| |||||| | || ||||| | || || ||||||||||||||| | |
Sbjct 321 TCTCAACGTCAAAGGTCTTCTTGA-TCTCACTAGCAACA--CCATTGCAGATTACA-T-C 375
Query 348 A--GATAAGACGGTAAATGAGATTCGAGAACTCTTTAACATCGAGAACGATTACACACCT 405
| ||||||| |||| | || || |||||| |||||||||||||||||||||| ||||||
Sbjct 376 AAAGATAAGAAGGTAGAGGAAATACGAGAAATCTTTAACATCGAGAACGATTATACACCT 435
Query 406 GAGGAAGAAGAAGAGCTTCGCAAGAAGAACGAATGGGC-TTT 446
|||||||||||||||||||||||| |||| | |||||| |||
Sbjct 436 GAGGAAGAAGAAGAGCTTCGCAAGCAGAAAGCATGGGCATTT 477
> Ahg484224 jgi|Araly1|484224|fgenesh2_kg.5__216__AT2G03190.1
Length=507
Score = 287 bits (155), Expect = 5e-77
Identities = 186/201 (93%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAAGAAGATTGTGTTGACTAGCTCCGATGATGAATGTTTTGAGATTGACGAA 60
||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 1 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 60
Query 61 GCGGTGGCTCGTAAGA-TGCAGATGGTAGCGCACATGATCGATGACGATTGCGCCGATAA 119
|||||||||||||| | ||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 61 GCGGTGGCTCGTAA-ACTGCAGATCATAGCGCACATGATTGATGACGACTGCGCCGATAA 119
Query 120 AGCAATCCGGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 179
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 120 AGCAATCCCGCTTCAAAACGTCACTGGAAAGATCCTCGCTGTGGTTATCGAGTATTGCAA 179
Query 180 GAAACACGTTGATGATGTTGA 200
|||||||||| ||||||||||
Sbjct 180 GAAACACGTTAATGATGTTGA 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16368747681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5