BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20170.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480452 jgi|Araly1|480452|fgenesh2_kg.3__3153__AT2G20170.1 2015 0.0
Ahg319549 jgi|Araly1|319549|fgenesh1_pm.C_scaffold_3002565 1051 0.0
> Ahg480452 jgi|Araly1|480452|fgenesh2_kg.3__3153__AT2G20170.1
Length=1461
Score = 2015 bits (1091), Expect = 0.0
Identities = 1349/1472 (92%), Gaps = 24/1472 (2%)
Strand=Plus/Plus
Query 1 ATGAGGTCATGCAC---TAAGCTTATCCTACTGAATTTTT-TCACAATAACTCTCATCTT 56
|||||||||||||| |||||||||||| |||| ||||| | |||||||||||||| ||
Sbjct 1 ATGAGGTCATGCACTAATAAGCTTATCCTTCTGACTTTTTAT-ACAATAACTCTCATTTT 59
Query 57 AGTTACGGAGAGTCGAAGAACAATACCATTGAAAAATGAGAAACAAGAGCTCAAGAAACT 116
|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 60 AGTTACAGAGAGTCGAAGAACAATACCATTGAAAAAGGAGAAACAAGAGCTCGAGAAACT 119
Query 117 ACTCAACCATATTAATAAACCCGCAATAAAAAGTTTCCAAACGAAACATGGTTATATATT 176
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACTCAACCATATTAATAAACCAGCAATAAAAAGTTTCCAAACGAAACATGGTTATATATT 179
Query 177 GGACTGCATCGACATTCAAAAGCAGCTCGCCTTTGATCATCCTTTGCTCAAAAACCATTC 236
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 180 AGACTGCATCGACATTCAAAAGCAGCTAGCCTTTGATCATCCTTCGCTCAAAAACCATTC 239
Query 237 TATTCAGTTGAAGCCTACAATCATACCTAAATGGACAAGAGATAAAA--AC-ACTCAAAA 293
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 240 TATTCAGTTGAAGCCTACAACCATACCTAAATGGACAAGAGATAAAATCACTTCTCAAAA 299
Query 294 ATCAAGTTCTCTGCCATTTCGACAAGATGAAGACATAAGTTGTCCACATGGAACAGTGAT 353
|||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 300 ATCAAGTTCTCTACCATTTCGACAAGATGAAGACATAAGTTGTCCGCTTGGAACAGTGAT 359
Query 354 TATTAAAAGAACTACACTTGAAGATCTTATACAAATTCAACGTTTGAAATATTTAGGGGT 413
|||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
Sbjct 360 TATTAAAAGAACTACACTTGAAGAACTTATACAAATTCAACGTATGAAATCTTTAGGGTT 419
Query 414 TAAGTATACAACTTCAAAAGACAAGGATTTCCTCAATATGACCGGTCGTCATTTTGCTAT 473
|||||||||||||||| ||||||| | |||||||||||||| | ||||||||||| ||
Sbjct 420 TAAGTATACAACTTCAGAAGACAATAACGTCCTCAATATGACCAGCCGTCATTTTGCGAT 479
Query 474 AGCTGAATACTATAGAGACAACTATGGAGCAACGGGAAACATAAATTTATGGGATCCACC 533
|||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 480 AGCTGAATACTATAAAGACAATTATGGAGCAACGGGAAACATAAATATATGGGATCCGCC 539
Query 534 TGTC-AACCCTGATCAATTTAGTCTTGCAAGTATATATGTCGAGAACGGTTTTAGAGACA 592
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 540 TGTCGAA-CCTGATCAATTTAGTCTTGCAAGTATATATGTCGAGAACGGCCTTAGAAACA 598
Query 593 GTTTACAGAGCATTTCAGCTGGATGGATAGTGTCCCCGAAACTAAATCAGAATAATAGTG 652
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 599 ATTTACAAAGCATTTCAGCTGGATGGATAGTGTCCCCGAAACTAAATCAAAATCATAGTG 658
Query 653 GCTTATTTACATATTGGACCGCAGATGGACATGAGAAGACAGGTTGCTACAATACAGTAT 712
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 659 GCTTATTTACATATTGGACGGCAGATGGGCATGAGAAGACAGGTTGCTACAATACAGTAT 718
Query 713 GTCCAGGGTTTGTACAAGTGAGTAGCAAGCTCG-CACTTGGAACTCTTGCCAGACCAACT 771
|||| || ||||||||||||||||||||| ||| |||||||||||||||||| |||| |
Sbjct 719 GTCCCGGATTTGTACAAGTGAGTAGCAAG-TCGGCACTTGGAACTCTTGCCAAACCAGTT 777
Query 772 TCCACTTATGATGGCGAACAATACTATTTACAAGCCATCATTTATCAGGATAATATTACA 831
|||||||||| ||| |||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 778 TCCACTTATGGTGGTGAACAATATTATTTAGAAGCCATCATTTATCAGGATAATGTTACA 837
Query 832 GGAAACTGGTGGTTTTTGATAAAGAACGAGCCAATTGGGTATTGGCCAAAATCATTGTTT 891
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 838 GGAAACTGGTGGTTTTTGCTAAAGAACGAGCCAGTTGGGTATTGGCCAAGATCATTGTTT 897
Query 892 CATGTTCAAGGTTTAGCTTATGGAGCAAGTCGTGTGTTTTGGGGAGGAGAAGTTTTCAGT 951
|||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||| |
Sbjct 898 CATGTTGATGGTTTAGCTAATGGAGCAAGTCGGGTGTTTTGGGGAGGAGAAGTTTTCAAT 957
Query 952 GCACTGAGACAGAGTACAAGCCCACTCATGGGAAGTGGACATTTCCCAAAAGAAGGTTTC 1011
||| |||||||||| |||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 958 GCAGTGAGACAGAGCACAAACCCAATCATGGGAAGTGGACATTTCCCACAAGAAGGTTTC 1017
Query 1012 AAAAAGGCAGCTTTTGTGAACGGCCTTAAAGTGATAGATCGTGAAATAGAAAAAATTAGA 1071
|||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||
Sbjct 1018 AAAAAGGCAGCTTTTGTGAATGGTCTTAAAGTGATCGATCGTGAAGTAGAAAAAATTAGA 1077
Query 1072 AGTCCACCAGTTAAAGATTTAAGATTATTCGCAAACAGC-CCAAAATGTTATAAAGTCGA 1130
||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1078 AGTCCACCAACTAAAGATTTAATATTATTCGCAAACA-CTCCAAAATGTTATAAAGTCGA 1136
Query 1131 AACAAAAACAGGGGTCGGTGAGGAGTGGTCTAGTGCAATTTTCTATGGAGGACCAGGAGG 1190
||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1137 AACAAAATCAGGGGTTGGTGAGGAGTGGTCTAGTGCAATTTACTATGGAGGACCAGGAGG 1196
Query 1191 ATGCACCATTACTTAACAAATCTTTAAGTCTTTGGG-ACTTGGGAGTGGAACATTTGTAA 1249
||||| ||||||||||||||||| |||| ||||| | |||||||||||| || |||
Sbjct 1197 ATGCATAATTACTTAACAAATCTTCAAGTTTTTGGATA-TTGGGAGTGGAATATATGTGT 1255
Query 1250 ATATTCACTGTTAA-GCTTAATCAAGAATTGCTTTCGTCAAAAGTAATAATAATAGACGA 1308
||||| |||| || | || | | || ||||||| ||||||||||||||||| ||||||
Sbjct 1256 ATATTAACTGATATTGATTCCTTAGGATTTGCTTT-GTCAAAAGTAATAATAAGAGACGA 1314
Query 1309 GAAAAGAATAATGATCGGCTCTCTAAGTATA-CAACCTGAGAAGAGAGGACAAAACAAAC 1367
|||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1315 GAAA-GAATAATGATCGGCTCTCTAAGTATAACAACCTGAGAAGAGAGAACAAAACAAAA 1373
Query 1368 CAAAGAAAAACAAGAAACAGATGGCGATATATATACATGTTAGATTCCTTACTACTACTC 1427
|||| |||||||||||||||||||| | ||||| ||||||||||||||| |||||||
Sbjct 1374 CAAAAAAAAACAAGAAACAGATGGC-A-ATATA--CATGTTAGATTCCTTGGTACTACTT 1429
Query 1428 ACCCTGCTCGAACTTGGATACGATGTTGCTTG 1459
||||||||||||||||| ||||||||||||||
Sbjct 1430 ACCCTGCTCGAACTTGGGTACGATGTTGCTTG 1461
> Ahg319549 jgi|Araly1|319549|fgenesh1_pm.C_scaffold_3002565
Length=1179
Score = 1051 bits (569), Expect = 0.0
Identities = 974/1164 (84%), Gaps = 50/1164 (4%)
Strand=Plus/Plus
Query 70 CGAAGAACAATACCATTGAAAA-ATGAGAAACAA-GAGCTCA-AGAAACTACTCAACCAT 126
|||||||| |||||| | |||| | || ||| || ||||| | |||||||||||||||||
Sbjct 39 CGAAGAACCATACCA-TCAAAAGAGGAAAAAAAATGAGCT-AGAGAAACTACTCAACCAT 96
Query 127 ATTAATAAACCCGCAATAAAAAGTTTCCAAACGAAACATGGTTATATATTGGACTGCATC 186
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 97 ATTAATAAACCCGCAGTAAAAAGTTTTCAAACGAAACATGGTTACATATTGGACTGCATC 156
Query 187 GACATTCAAAAGCAGCTCGCCTTTGATCATCCTTTGCTCAAAAACCATTCTATTCAGTTG 246
||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct 157 GACATTCAAAAGCAGCTAGCCTTTGATCATCCTTCGCTCAAAAACCATTCGATTCAGTTG 216
Query 247 AAGCCTACAATCATACCTAAATGGACAAGAGATAA-AA-AC-ACTCAAAAATCAAGTTCT 303
||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 217 AAGCCTACAATTATACCTAAATGGACAAGAGATAACAACACTTCTCAAAAATCAAGTTCT 276
Query 304 CTGCCATTTCGACAAGATGAAGACATAAGTTGTCCACATGGAACAGTGATTATTAAAAGA 363
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 277 CTGCCATTTCGACAAGCTGACGACATAAGTTGTCCACTTGGAACAGTGATTATTAAAAGA 336
Query 364 ACTACACTTGAAGATCTTATACAAATTCAACGTTTGAAATATTTAGGGGTT-AAGTATAC 422
|||||||||||||||||||||||| ||||||||||||||| |||||| || |||||| |
Sbjct 337 ACTACACTTGAAGATCTTATACAATTTCAACGTTTGAAATCCTTAGGG-TTCAAGTATCC 395
Query 423 AACTTCAAAAGACAAGGATTT-CCTCAATATGA-CCGGTCGTCATTTTGCTATAGCTGAA 480
| | | ||||| ||| | || | ||||| ||| || ||||||||| |||||| |
Sbjct 396 AGCACCCCAAGACG-GGAACTGCCCCGGTATGAACCG-TCATCATTTTGCGATAGCTCAG 453
Query 481 TACTATAGAGACAACT-ATGGAGCAACGGGAAACATAAATTTATGGGATCCACCTGTCAA 539
||||||| |||||| | ||||||||| ||||||||| ||| || ||||||| ||||||
Sbjct 454 TACTATAAAGACAA-TGATGGAGCAAGGGGAAACATTAATATAGGGGATCCGTTTGTCAA 512
Query 540 CCCTGATCAATTTAGTCTTGCAAGTATATATGTCGAGAACGGTTTTAGAGACA-GTTTAC 598
||||||| |||||| |||||||||| |||||||| |||| ||| ||| | ||| ||
Sbjct 513 AGATGATCAACTTAGTCCAGCAAGTATATCTGTCGAGAGCGGTCTTAAAGATACGTT-AC 571
Query 599 AGAGCATTTCAGCTGGATGGATAGTGTCCCCGAAACTAAATCAGAATAATAGTGGCTTAT 658
||||||| ||||||||||||||||| ||||| ||| | || |||||| ||||||||||||
Sbjct 572 AGAGCATCTCAGCTGGATGGATAGTATCCCCAAAATTGAACCAGAATCATAGTGGCTTAT 631
Query 659 TTACATATTGGACCGCAGATGGACATGAGAAGACAGGTTGCTACAATACAGTATGTCCAG 718
||||||||||| | | | ||||| || | || ||||||||||| | |||| ||||||| |
Sbjct 632 TTACATATTGGTCGGTAAATGGATATAACAAAACAGGTTGCTATAGTACATTATGTCCTG 691
Query 719 GGTTTGTACAAGTGAGTAGCAAGCTCGCACTTGGAACTCTTGCCAGA-CCAACTTCCACT 777
||||||| ||||| || |||||| |||| |||||| ||| |||| || || ||||| |
Sbjct 692 GGTTTGTTCAAGTAAGCAGCAAGTTCGCTCTTGGAGCTCGTGCC-GAACCTGTTTCCATT 750
Query 778 TATGATGG-CGAACAATA-CTATTTACAAGCCATCATTTAT-CA-GGATAAT-ATTACAG 832
|||||||| | ||||||| | | ||| ||| || | || || || |||| || || ||||
Sbjct 751 TATGATGGTC-AACAATATC-AGTTAGAAGTCAGC-TT-ATTCAAGGATTATTAT-ACAG 805
Query 833 GAAACTGGTGGTTTTTGATAAA-GAACGAGCCAATTGGGTATTGGCCAAAATCATTGTTT 891
|| | ||||||||| || || || ||||||||||||||||||||||| |||||||||
Sbjct 806 GAGATTGGTGGTTTGTGCTAGGCGA-CGAGCCAATTGGGTATTGGCCAAGATCATTGTTC 864
Query 892 CATGTTCAAGGTTTAGCTTATGGAGCAAGTCGTG-TGTTTTGGGGAGGAGAAGTTTTCAG 950
||| || |||| |||||| ||||||||| ||| | | |||||||||||||||||||| ||
Sbjct 865 CATTTTGAAGGCTTAGCTAATGGAGCAAATCG-GATATTTTGGGGAGGAGAAGTTTTTAG 923
Query 951 TGCACTG-AGA-CA-GAGTACAAGCCCACTCATGGGAAGTGGACATTTCCCAAAAGAAGG 1007
| || || | | || || || | ||||| ||||||||||||||||||| ||| |||| ||
Sbjct 924 TTCAGTGGAAAACATGA-TA-A-GCCCAATCATGGGAAGTGGACATTTTCCACAAGAGGG 980
Query 1008 -TTTCAAAAAGGCAGCTTTTGTGAACGGCCTTAAAGTGATAGATCGTGAAATAGAAAA-A 1065
||| |||||||||||||||||||| || ||||||||||| |||| || | |||| |
Sbjct 981 CTTT-AAAAAGGCAGCTTTTGTGAATGGTCTTAAAGTGATCGATCATGTT-TC-AAAAGA 1037
Query 1066 A-TTAGAAGTCCACCAG-TTAAAGATTTAA-GATTATTCGCAAACAGCCCAAAATGTTAT 1122
| |||| ||||| ||| || | | ||| | ||||| |||||||| |||| ||||||
Sbjct 1038 AGTTAGGAGTCCCCCAACTTCGGG-TCTAATG-TTATTTGCAAACAGTCCAACTTGTTAT 1095
Query 1123 AAAGTCGAAACAAAAACAGGGGTCGGTGAGGAGTGGTCTAGTGCAATTTTCTATGGAGGA 1182
|| ||| |||| | | || ||| |||||||||||||||||||||||||| |||||||||
Sbjct 1096 AACGTCCAAACGATATCAACGGTTGGTGAGGAGTGGTCTAGTGCAATTTTTTATGGAGGA 1155
Query 1183 CCAGGAGGATGCACCATTACTTAA 1206
|||||||||||||| |||| ||||
Sbjct 1156 CCAGGAGGATGCACAATTAGTTAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5