BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20180.2
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319546 jgi|Araly1|319546|fgenesh1_pm.C_scaffold_3002562 1729 0.0
Ahg483401 jgi|Araly1|483401|fgenesh2_kg.4__2461__AT2G43010.2 152 8e-36
Ahg480452 jgi|Araly1|480452|fgenesh2_kg.3__3153__AT2G20170.1 78.7 1e-13
> Ahg319546 jgi|Araly1|319546|fgenesh1_pm.C_scaffold_3002562
Length=1461
Score = 1729 bits (936), Expect = 0.0
Identities = 1328/1499 (89%), Gaps = 100/1499 (7%)
Strand=Plus/Plus
Query 10 ATGCATCATTTTGTCCCTGACTTCGATACCGATGATGATTATGT---CAACAACC---AT 63
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1 ATGCATCATTTCGTCCCTGACTTCGATACAGATGATGATTATGTCAACAACAACCATAAT 60
Query 64 AATTCTTCTTTGAATCATCTTCCTAGAAAATCCATTACTACTATGGGTG-A-A-GATGAT 120
||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 61 AATTCATCTTTGAATCATCTTCCTAGAAAATCCATTACTACTATGGGTGAAGATGATGAT 120
Query 121 GATCTTATGGAGCTTTTATGGCAGAACGGTCAAGTTGTTGTTCAAAACCAGAGACTTCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCTTATGGAGCTTTTATGGCAGAACGGTCAAGTTGTTGTTCAAAACCAGAGACTTCAC 180
Query 181 ----AC----C-AAGAAA-C--CTTCTTCTTC---T-C--C--A-C--C--GAAG---C- 211
|| | |||||| | |||||||||| | | | | | | ||| |
Sbjct 181 AATAACAATACGAAGAAACCTTCTTCTTCTTCTTTTCCGACGAAGCTTCTTCAAGCTCCG 240
Query 212 -TTCTTCCTTCTATGG---ATC--C-T---CAGCAGCAACCTTCTTCAGATCAGAATCTT 261
||| ||||||||||| ||| | | ||||||||||| || ||||||||||||||
Sbjct 241 ATTCCTCCTTCTATGGATAATCATCATCAGCAGCAGCAACCGTCGACAGATCAGAATCTT 300
Query 262 TTTATTCAAGAAGATGAAATGACTTCTTGGCTTCATTATCCTCTCCGTGACGATGATTTC 321
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TTTATTCAAGAAGATGAAATGACTTCTTGGCTTCATTATCCTCTTCGTGACGATGATTTC 360
Query 322 TGCTCAGATCTTCTCTTCTCCGCCGCACCTACTGCGACGGCTACCGCGACG-GTGA-GTC 379
||||| ||||| ||||||||||||||||| ||| | | || |||||| || | ||
Sbjct 361 TGCTCCGATCTCCTCTTCTCCGCCGCACCAACT-CCTC-CCT-GTGCGACGAGTCAGGT- 416
Query 380 AAGTCACCGCCGCGAGA---CC---GCCAGTA---TCTTCGACGAATGAGTCGAGGCCGC 430
|||||||||| ||| || ||||||| |||||| |||||||||||||||| |
Sbjct 417 -GGTCACCGCCGTAAGACCGCCAGTGCCAGTACCGTCTTCGTCGAATGAGTCGAGGCCAC 475
Query 431 CGGTGAGGAACTTCATGAATTTCTCGAGGCTGAGAGGGGATTTTAATAACGGTAGAGGTG 490
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 476 CGGTGAGGAATTTCATGAATTTCTCGAGGCTGAGAGGGGATTTTATTAACGGTAGA---G 532
Query 491 GTGAATCTGGACCGTTGCTTTCGAAGGCGGTTGTGAGAGAATCTACGCAGGTAAGTCCTA 550
||||||||||| | | ||| || ||||||||||||| || |||||||||||||
Sbjct 533 GTGAATCTGGA------C---CAAAGACGATTGTGAGAGAATCGACTCAGGTAAGTCCTA 583
Query 551 GCGCAACACCGTCG---GCGGCGGCGAGTGAATCCGGTTTAACACGGCGGACGGATGGTA 607
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 584 GCGCAACACCGTCGTCAGCGGCGGCGAGTGAATCTGGTTTAACACGGGGGACGGATGGTA 643
Query 608 CTGACAGTTCCGCCGTAGCTGGAGGCGGCGCGTATAATCGGAAGGGAAAAGCAGTGGCTA 667
|||| || | || | | ||| | | ||||||||||||||||||||||||||
Sbjct 644 CTGAAAG---CTCC--A-C------CGG-AC-T-TAATCGGAAGGGAAAAGCAGTGGCTA 688
Query 668 TGACGGCGCCGGCGATCGAGATAACCGGTACATCGTCATCTGTAGTGTCAAAGAGCGAAA 727
||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 689 TGACGGCGCCGGCCATTGAGATTACCGGTACATCGTCTTCTGTAGTGTCAAAGAGCGAAA 748
Query 728 TCGAACCGGAGAAGACGAACGTCGATGATAGGAAACGAAAAGAGAGAGAAGCCACCACTA 787
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 749 TCGAACCGGAGAAGACGAACGTTGATGACAAGAAACGAAAAGAGAGAGAAGCCACCAC-- 806
Query 788 CTGATGAAACTGAATCCCGTAGCGAGGAAACAAAACAAGCACGTGTATCAACAACATCTA 847
| || ||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 807 C-GAGGAAGCTGAGTGCCGTAGCGAGGAAACAAAACAAGCACGTGGATCAACAACATCTA 865
Query 848 CCAAGAGATCTCGTGCTGCTGAAGTTCATAATCTCTCTGAAAGAAAACGGAGAGATAGGA 907
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 866 CCAAGAGATCTCGTGCTGCTGAAGTTCATAATCTCTCTGAAAGGAAACGGAGAGATAGAA 925
Query 908 TCAATGAGAGAATGAAAGCTTTGCAAGAACTTATACCTCGCTGCAACAAGTCAGATAAAG 967
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 926 TCAATGAGAGGATGAAAGCTTTGCAAGAACTCATACCTCGCTGCAACAAGTCGGATAAAG 985
Query 968 CTTCGATGCTAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTTCAAATACAGATGA 1027
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 986 CTTCGATGCTAGATGAAGCTATTGAGTACATGAAGTCTCTACAGCTTCAAATACAGGTGA 1045
Query 1028 TGTCAATGGGATGTGGAATGATGCCAATGATGTATCCGGGCATGCAACAGTACATGCCTC 1087
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1046 TGTCAATGGGATGTGGAATGATGCCAATGATGTATCCGGGTATGCAACAGTACATGCCAC 1105
Query 1088 ATATGGCGATGGGTATGGGTATGAACCAGCCTATTCCTCCTCCTTCCTTCATGCCATTCC 1147
| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1106 ACATGGCGATGGGTATGGGTATGAACCAGCCTCTTCCTCCTCCTTCCTTTATGCCATTCC 1165
Query 1148 CCAACATGTTAGCCGCTCAAAGACCTTTGCCTACACAAACTCACATGGCCGGGTCAGGAC 1207
||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||| |||
Sbjct 1166 CCAACATGTTAGCGGCTCAAAGACCTTTGCCAACACAAACTCAGATGGGCGGGTCAAGAC 1225
Query 1208 CGCAATACCCTGTTCATGCTTCTGACCCGTCAAGAGTCTTTGTACCGAACCAGCAGTATG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 CGCAATACCCTGTTCATGCTTCTGACCCGTCAAGAGTCTTTGTACCGAACCAGCAGTATG 1285
Query 1268 ATCCAACCTCGGGCCAGCCTCAGTATCCAGCTGGTTACACGGATCCATATCAGCAGTTCC 1327
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1286 ATCCAACCTCGGGCCAGCCTCAGTATCC---TGGTTACATGGATCCATATCAGCAGTTCC 1342
Query 1328 GCGGTCTCCACCCGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTACCCAAGTT 1387
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 GCGGTCTCCACCTGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTACCCAAGTT 1402
Query 1388 CGAGCAGGGTGAGTAGTAGTAAGGAATCTGAGGATCACGGAAACCACACAACAGGTTAA 1446
|||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 1403 CGAGCAGGGTAAGTAGTAGCAAGGAATCTGAGGATCAAGGAAACCACAAAACAGGTTAA 1461
Score = 171 bits (92), Expect = 2e-41
Identities = 107/114 (94%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1502 TCCGACCCGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTATCCAAGTTCGAGC 1561
||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1349 TCC-ACCTGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTACCCAAGTTCGAGC 1407
Query 1562 AGGGTGAGTAGTAGTAAGGAATCTGAGGATCACGGAAACCACACAACAGGTTAA 1615
||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 1408 AGGGTAAGTAGTAGCAAGGAATCTGAGGATCAAGGAAACCACAAAACAGGTTAA 1461
> Ahg483401 jgi|Araly1|483401|fgenesh2_kg.4__2461__AT2G43010.2
Length=1633
Score = 152 bits (82), Expect = 8e-36
Identities = 158/194 (81%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 858 TCGTGCTGCTGAAGTTCATAATCTCTCTGAAA-GAAAACGGAGAGATAGGATCAATGAGA 916
||| || |||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 952 TCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGAGGA-GGAGAGATAGGATCAATGAGA 1010
Query 917 GAATGAAAGCTTTGCAAGAACTTATACCTCGCTGCAACAAGTCAGATAAAGCTTCGATGC 976
||||||| ||| |||| ||||| ||||||| ||||| || | ||||||||||||||
Sbjct 1011 GAATGAAGGCTCTGCAGGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTT 1070
Query 977 TAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTT-CAAATACA-GATGATGTCAAT 1034
|||| ||||| || || || ||||||| |||||| || ||| | || | |||||| ||
Sbjct 1071 TAGACGAAGCCATAGATTATTTGAAATCACTTCAG-TTACAACTTCAAG-TGATGTGGAT 1128
Query 1035 GGG-ATGTGGAATG 1047
||| | ||||||||
Sbjct 1129 GGGGA-GTGGAATG 1141
> Ahg480452 jgi|Araly1|480452|fgenesh2_kg.3__3153__AT2G20170.1
Length=1461
Score = 78.7 bits (42), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1366 CAAGCAACATCGTACCCAAGTTCGAGCAGGGTGAGTAGTAGTAAGGAATCT 1416
|||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1461 CAAGCAACATCGTACCCAAGTTCGAGCAGGGTAAGTAGTACCAAGGAATCT 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5