BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20208.1

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319544 jgi|Araly1|319544|fgenesh1_pm.C_scaffold_3002560           339    1e-92


> Ahg319544 jgi|Araly1|319544|fgenesh1_pm.C_scaffold_3002560
Length=240

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 220/238 (92%), Gaps = 2/238 (1%)
 Strand=Plus/Plus

Query  75   ATGGC-AAAGGCATCTTCTACACTTGTTCTCTCAATCATCTTCCTTGTTATGTTTGCCTT  133
            ||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1    ATGGCGAAA-GCAGCTTCTACACTTGTTCTCCCAATCATCTTCCTTGTTATGTTTGCCTT  59

Query  134  AGTTGAGCAAAATATGGGATGCACAGCGACTATGGGACCATGCGAAAAGGATAAAAGCTG  193
            ||||||||||||||||||||||||||||| ||||||||  |||||||||||||| |||||
Sbjct  60   AGTTGAGCAAAATATGGGATGCACAGCGAGTATGGGACTGTGCGAAAAGGATAAGAGCTG  119

Query  194  TAGTGCCACATGCAGAGCTACGTTTGGAGATAGGGCTAATGGCTTCTGCGACTACAGTAC  253
            |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  120  TAGTGCCAAATGCAGAGCTACGTTTGGAGATAAGGCTAATGGCTTCTGCGACCACAGTAC  179

Query  254  TAGTACTAGTCCTGGTGGAGAATGTACTTGCGTCTACCATTGTCCGCCTGTGGTGCCT  311
            ||||||| ||  |||||||||||||| ||||||||||| |||||||||| ||| ||||
Sbjct  180  TAGTACTGGTGGTGGTGGAGAATGTATTTGCGTCTACCCTTGTCCGCCTCTGGCGCCT  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16330592092


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5