BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20210.1 Length=2069 Score E Sequences producing significant alignments: (Bits) Value Ahg480448 jgi|Araly1|480448|fgenesh2_kg.3__3149__AT2G20210.1 3077 0.0 > Ahg480448 jgi|Araly1|480448|fgenesh2_kg.3__3149__AT2G20210.1 Length=2032 Score = 3077 bits (1666), Expect = 0.0 Identities = 1918/2040 (94%), Gaps = 16/2040 (1%) Strand=Plus/Plus Query 32 TGCAGCGGGAAG-TTTTGGTTGCGT--TGCGATTGGCACTCTCTTCTCTTTGTTTGGATG 88 |||||||||||| ||| |||||||| |||||| |||||||||||||||||| ||||| Sbjct 1 TGCAGCGGGAAGATTTGGGTTGCGTAGAGCGATTCACACTCTCTTCTCTTTGTTAGGATG 60 Query 89 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCCCTCAAAATTCAGCTTCTAGAA 148 |||||||||||||||||||||||||||||||||||||| |||||| ||||||| || || Sbjct 61 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCTCTCAAACTTCAGCTCCTTCAA 120 Query 149 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGATGGC-ATTGT 207 ||||||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 121 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGAT-GCTGTTAT 179 Query 208 CGCTCACTTGCCTGCTCTTGCTTTGCAGAAGTTTCAGACCAACATGCCGTTTCATTGCTT 267 ||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| Sbjct 180 CGCTCACTTGCCTGCTCTTGCGTTGCAGAATTTTCAGACCAACATGCCGTTTAATTGCTT 239 Query 268 GGATAGTTATGAATCTGGAGATGATTGCTGCTTGATTACTGGGAGAAAACGTGC-A--AG 324 ||||| |||||||||||||||||| | |||||||||| ||| ||||||||| | | || Sbjct 240 GGATAATTATGAATCTGGAGATGA-T--TGCTTGATTAATGGCAGAAAACGTTCAAGCAG 296 Query 325 AAATGATGTACTTGGTAGCTCTTGGAAGTTGTTGTTTAAGCTGCGGTGGCCTGATTTTGT 384 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 297 AAATGATCCACTTGGTAGCTCTTGGAAGATGTTGTTTAAGCTGCGGTGGCCTGAGTTTGT 356 Query 385 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTCCAAAA 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 357 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTGCAAAA 416 Query 445 TTGTGTTGATGAAGCAGCTGAGGTAGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 504 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 417 TTGTGTTGATGAAGCAGCTGAGGTTGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 476 Query 505 CATTAATGTATCTGATAACATATTGAGATACATTTGCCATGAAGAGCACATCATGACTTG 564 ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 477 TATTAATGTATCAGATAACATATTGAGATACATTTGCCATGAAGAG--CAT-ATGACTTG 533 Query 565 TCAAAATTGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCATATCTTAG 624 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 534 TCAAAAATGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCGTATCTTAG 593 Query 625 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 653 Query 685 TAAATTGCGAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 744 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 TAAATTGCAAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 713 Query 745 CAAGCTCTTGATTCAGAGCCGAGAAACATTAACTTCGCTTGAACTTATTCACTGCAAGCT 804 |||||||||||| |||| |||||| || |||| ||||||||| |||||||||||||||| Sbjct 714 CAAGCTCTTGATCCAGACCCGAGACACCTTAATTTCGCTTGAGTTTATTCACTGCAAGCT 773 Query 805 TTCTTTGAGTTCCATCAGTGCAATATGCACTTCTCTTCATGAAAAGGGTATCCACACAAC 864 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 774 TTCTTCGAGTTCCATCAGTGCAATATGCGCTTCTCTTCATGAAAAGGGTATCCACACTAC 833 Query 865 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCGCC 924 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 834 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCACC 893 Query 925 TTCCGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTGGCGA 984 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 894 TTCTGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTTGCGA 953 Query 985 TAGCAACCTCGATAGATATTTTGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1044 ||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||| Sbjct 954 TAGCAACCTTGATAGGCATATCGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1013 Query 1045 CAACCTTTCATCCCTTGACCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACTTTTAG 1104 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1014 AAACCTTTCGTCCCTTGATCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACGTTTAG 1073 Query 1105 CTGCAAATCTGTTGTTGGTTCTCTGTCATCTGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1164 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1074 CTGCAGATCTGTTGTTGGTTCTCTGTCATCCGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1133 Query 1165 CAACTTAAGGGGAAATGAACTTGACAGATACGATGCAGAGAATCTTGCACATGCTCTACT 1224 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1134 CAACTTAAGGGGAAATGAACTCGACAGATACGATGCAGAGAATCTTGCACATGCTCTTCT 1193 Query 1225 TCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1284 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 TCATATGCCCGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1253 Query 1285 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATCTGAATTT 1344 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1254 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATTTGGATTT 1313 Query 1345 GGAGAACTGTGAGCTATCATGTTGTGGAGTTATTGAGTTTCTTGATACCCTGTCGATGCT 1404 ||| ||||||||||| ||||||||||||||||| ||||||||||||||| | || ||||| Sbjct 1314 GGAAAACTGTGAGCTGTCATGTTGTGGAGTTATCGAGTTTCTTGATACCTTCTCAATGCT 1373 Query 1405 GGAGAAACCTTTAAAGTTCCTGTCTGTTGCAGATAATGCCCTCGGAAGCGAGGTTGCAGA 1464 |||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| || Sbjct 1374 GGAGAAGCCTATAAAGTTCCTATCTGTTGCAGATAATGCCCTCGGAAGTGAGGTTGCGGA 1433 Query 1465 GGCTGTAGTAAACTCTTTCACAATCTCCATCGAGTCGCTCAATATTAT-GGGTATAGGAC 1523 |||| ||||||||||| ||||| ||||||| ||||| ||||| ||| | ||||||||||| Sbjct 1434 GGCTATAGTAAACTCTATCACAGTCTCCATTGAGTCTCTCAACATT-TCGGGTATAGGAC 1492 Query 1524 TAGGTCCTCTCGGGTTTCTTGCATTAGGCAGAAAACTTGAAAAAGTGTCGAAGAAGCTGC 1583 |||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| | Sbjct 1493 TAGGTCCTCTCGGGTTTCTTGCGCTAGGCAGAAAACTTGAAAAAGGGTTGAAGAAGCTCC 1552 Query 1584 TGAGTATTAATATAAGCAAAAACCGTGGAGGACTAGAGACCGCTAGATTCCTGTCAAAGC 1643 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1553 TGAGTATCAATATAAGCAAAAACCGTGGAGGACTAGAGACTGCTAGATTCCTGTCAAAGC 1612 Query 1644 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCTG 1703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1613 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCCG 1672 Query 1704 AAGCCTTGCTCATGCTATGTGATTCCCTGAGAACTGCAAAAGGTGATCTCAAACGTCTTG 1763 |||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| Sbjct 1673 AAGCCTTGCTCATGCTATGTGAATCCCTGAGAACTGCAAAATGTGATCTCAAACATCTTG 1732 Query 1764 ACATGACTGGGAATAGTTGCATCAGCCACGAAGCTGACCATTCTTCTCTACTCCATGAAT 1823 ||||||| |||||||| ||||||||||| |||||| ||||||||||||||| || ||||| Sbjct 1733 ACATGACCGGGAATAGCTGCATCAGCCATGAAGCTAACCATTCTTCTCTACACCGTGAAT 1792 Query 1824 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1793 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1852 Query 1884 ACGATGATGACCCGTAGATAGTTCCTATATACCGGTTTATCCTTCAGTCTGGAACTGTTT 1943 |||||||||||||||||||| ||||| || ||| |||||||||| ||||||| |||||| Sbjct 1853 ACGATGATGACCCGTAGATAATTCCTCTAGACCTGTTTATCCTTTAGTCTGGTTCTGTTT 1912 Query 1944 ACTGGTGAATTCATTGGTTGTGTATGTGCATTAGGTTGGTTCAACGTTCACATGAAATAG 2003 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 1913 ACTGGTGAATTCATTGGTTATGTATGTGCATTAGGTTGGCTCAACGTTCACATGAAATAG 1972 Query 2004 CATCCCAAAACATCTTAAACCGTCGCCTaaaaaaaTAGTCAGAGAGCAGTGGTTTAAATC 2063 ||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| Sbjct 1973 CATCCCAAAACATCTAAAAGCGTCGCCCAAAAAAATAGTCAGAGAGCAGTGATTTAAATC 2032 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77818370535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5