BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20210.1
Length=2069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480448 jgi|Araly1|480448|fgenesh2_kg.3__3149__AT2G20210.1 3077 0.0
> Ahg480448 jgi|Araly1|480448|fgenesh2_kg.3__3149__AT2G20210.1
Length=2032
Score = 3077 bits (1666), Expect = 0.0
Identities = 1918/2040 (94%), Gaps = 16/2040 (1%)
Strand=Plus/Plus
Query 32 TGCAGCGGGAAG-TTTTGGTTGCGT--TGCGATTGGCACTCTCTTCTCTTTGTTTGGATG 88
|||||||||||| ||| |||||||| |||||| |||||||||||||||||| |||||
Sbjct 1 TGCAGCGGGAAGATTTGGGTTGCGTAGAGCGATTCACACTCTCTTCTCTTTGTTAGGATG 60
Query 89 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCCCTCAAAATTCAGCTTCTAGAA 148
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||
Sbjct 61 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCTCTCAAACTTCAGCTCCTTCAA 120
Query 149 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGATGGC-ATTGT 207
||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 121 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGAT-GCTGTTAT 179
Query 208 CGCTCACTTGCCTGCTCTTGCTTTGCAGAAGTTTCAGACCAACATGCCGTTTCATTGCTT 267
||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct 180 CGCTCACTTGCCTGCTCTTGCGTTGCAGAATTTTCAGACCAACATGCCGTTTAATTGCTT 239
Query 268 GGATAGTTATGAATCTGGAGATGATTGCTGCTTGATTACTGGGAGAAAACGTGC-A--AG 324
||||| |||||||||||||||||| | |||||||||| ||| ||||||||| | | ||
Sbjct 240 GGATAATTATGAATCTGGAGATGA-T--TGCTTGATTAATGGCAGAAAACGTTCAAGCAG 296
Query 325 AAATGATGTACTTGGTAGCTCTTGGAAGTTGTTGTTTAAGCTGCGGTGGCCTGATTTTGT 384
||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 297 AAATGATCCACTTGGTAGCTCTTGGAAGATGTTGTTTAAGCTGCGGTGGCCTGAGTTTGT 356
Query 385 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTCCAAAA 444
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTGCAAAA 416
Query 445 TTGTGTTGATGAAGCAGCTGAGGTAGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 504
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 TTGTGTTGATGAAGCAGCTGAGGTTGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 476
Query 505 CATTAATGTATCTGATAACATATTGAGATACATTTGCCATGAAGAGCACATCATGACTTG 564
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 477 TATTAATGTATCAGATAACATATTGAGATACATTTGCCATGAAGAG--CAT-ATGACTTG 533
Query 565 TCAAAATTGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCATATCTTAG 624
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 534 TCAAAAATGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCGTATCTTAG 593
Query 625 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 653
Query 685 TAAATTGCGAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 744
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TAAATTGCAAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 713
Query 745 CAAGCTCTTGATTCAGAGCCGAGAAACATTAACTTCGCTTGAACTTATTCACTGCAAGCT 804
|||||||||||| |||| |||||| || |||| ||||||||| ||||||||||||||||
Sbjct 714 CAAGCTCTTGATCCAGACCCGAGACACCTTAATTTCGCTTGAGTTTATTCACTGCAAGCT 773
Query 805 TTCTTTGAGTTCCATCAGTGCAATATGCACTTCTCTTCATGAAAAGGGTATCCACACAAC 864
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 774 TTCTTCGAGTTCCATCAGTGCAATATGCGCTTCTCTTCATGAAAAGGGTATCCACACTAC 833
Query 865 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCGCC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 834 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCACC 893
Query 925 TTCCGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTGGCGA 984
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 894 TTCTGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTTGCGA 953
Query 985 TAGCAACCTCGATAGATATTTTGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1044
||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 954 TAGCAACCTTGATAGGCATATCGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1013
Query 1045 CAACCTTTCATCCCTTGACCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACTTTTAG 1104
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 AAACCTTTCGTCCCTTGATCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACGTTTAG 1073
Query 1105 CTGCAAATCTGTTGTTGGTTCTCTGTCATCTGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1164
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 CTGCAGATCTGTTGTTGGTTCTCTGTCATCCGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1133
Query 1165 CAACTTAAGGGGAAATGAACTTGACAGATACGATGCAGAGAATCTTGCACATGCTCTACT 1224
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1134 CAACTTAAGGGGAAATGAACTCGACAGATACGATGCAGAGAATCTTGCACATGCTCTTCT 1193
Query 1225 TCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1284
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TCATATGCCCGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1253
Query 1285 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATCTGAATTT 1344
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1254 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATTTGGATTT 1313
Query 1345 GGAGAACTGTGAGCTATCATGTTGTGGAGTTATTGAGTTTCTTGATACCCTGTCGATGCT 1404
||| ||||||||||| ||||||||||||||||| ||||||||||||||| | || |||||
Sbjct 1314 GGAAAACTGTGAGCTGTCATGTTGTGGAGTTATCGAGTTTCTTGATACCTTCTCAATGCT 1373
Query 1405 GGAGAAACCTTTAAAGTTCCTGTCTGTTGCAGATAATGCCCTCGGAAGCGAGGTTGCAGA 1464
|||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1374 GGAGAAGCCTATAAAGTTCCTATCTGTTGCAGATAATGCCCTCGGAAGTGAGGTTGCGGA 1433
Query 1465 GGCTGTAGTAAACTCTTTCACAATCTCCATCGAGTCGCTCAATATTAT-GGGTATAGGAC 1523
|||| ||||||||||| ||||| ||||||| ||||| ||||| ||| | |||||||||||
Sbjct 1434 GGCTATAGTAAACTCTATCACAGTCTCCATTGAGTCTCTCAACATT-TCGGGTATAGGAC 1492
Query 1524 TAGGTCCTCTCGGGTTTCTTGCATTAGGCAGAAAACTTGAAAAAGTGTCGAAGAAGCTGC 1583
|||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |
Sbjct 1493 TAGGTCCTCTCGGGTTTCTTGCGCTAGGCAGAAAACTTGAAAAAGGGTTGAAGAAGCTCC 1552
Query 1584 TGAGTATTAATATAAGCAAAAACCGTGGAGGACTAGAGACCGCTAGATTCCTGTCAAAGC 1643
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1553 TGAGTATCAATATAAGCAAAAACCGTGGAGGACTAGAGACTGCTAGATTCCTGTCAAAGC 1612
Query 1644 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCTG 1703
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1613 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCCG 1672
Query 1704 AAGCCTTGCTCATGCTATGTGATTCCCTGAGAACTGCAAAAGGTGATCTCAAACGTCTTG 1763
|||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 1673 AAGCCTTGCTCATGCTATGTGAATCCCTGAGAACTGCAAAATGTGATCTCAAACATCTTG 1732
Query 1764 ACATGACTGGGAATAGTTGCATCAGCCACGAAGCTGACCATTCTTCTCTACTCCATGAAT 1823
||||||| |||||||| ||||||||||| |||||| ||||||||||||||| || |||||
Sbjct 1733 ACATGACCGGGAATAGCTGCATCAGCCATGAAGCTAACCATTCTTCTCTACACCGTGAAT 1792
Query 1824 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1852
Query 1884 ACGATGATGACCCGTAGATAGTTCCTATATACCGGTTTATCCTTCAGTCTGGAACTGTTT 1943
|||||||||||||||||||| ||||| || ||| |||||||||| ||||||| ||||||
Sbjct 1853 ACGATGATGACCCGTAGATAATTCCTCTAGACCTGTTTATCCTTTAGTCTGGTTCTGTTT 1912
Query 1944 ACTGGTGAATTCATTGGTTGTGTATGTGCATTAGGTTGGTTCAACGTTCACATGAAATAG 2003
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1913 ACTGGTGAATTCATTGGTTATGTATGTGCATTAGGTTGGCTCAACGTTCACATGAAATAG 1972
Query 2004 CATCCCAAAACATCTTAAACCGTCGCCTaaaaaaaTAGTCAGAGAGCAGTGGTTTAAATC 2063
||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1973 CATCCCAAAACATCTAAAAGCGTCGCCCAAAAAAATAGTCAGAGAGCAGTGATTTAAATC 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77818370535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5