BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20230.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480447 jgi|Araly1|480447|fgenesh2_kg.3__3148__AT2G20230.1 1940 0.0
Ahg328819 jgi|Araly1|328819|fgenesh1_pm.C_scaffold_7001046 473 1e-132
> Ahg480447 jgi|Araly1|480447|fgenesh2_kg.3__3148__AT2G20230.1
Length=1354
Score = 1940 bits (1050), Expect = 0.0
Identities = 1247/1337 (93%), Gaps = 34/1337 (3%)
Strand=Plus/Plus
Query 67 TGAAATATTTTATAAGAAAACAAAAACAATAATTAACAAACAAAGGCGACACCTTTAGAT 126
||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 37 TGAGATATTTTATAAGAAAACAAAAACAATAATTATCGAACAACGGCGACACCTTTAGA- 95
Query 127 TCGACAAGACGACCAT-TTTAGAAAAAGCTTCTCAAATTCTCTCCTTATCCCCAAAAATT 185
|||||||||||||| || | ||||||||||| ||| ||||||||||||||||||||
Sbjct 96 --GACAAGACGACCATCGTT-G--AAAGCTTCTCAGATTTTCTCCTTATCCCCAAAAATT 150
Query 186 CAAACTTTTTTCTC-TTTGG-AAAATTCTGAGGCAAAAATGCGGCGTAATTGCTGCCATG 243
||| | |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 151 CAAGC-TTTTTCTCTTTTGGAAAAATTCTGA-GCAAAAATGCGGCGTAATTGCTGCCATG 208
Query 244 TTTCATTTGCTTCAACCCTCAAGATCCTTAATTTTGTCCAAGCTTTCATTGGTGTTTCGA 303
|||| |||||| |||| ||||||||||| |||||||| ||||||||||| |||||||| |
Sbjct 209 TTTCGTTTGCTACAACTCTCAAGATCCTCAATTTTGTTCAAGCTTTCATCGGTGTTTCCA 268
Query 304 TCATTATCTACTCCATATGGATGCTCCATGAATACAGCCGTCACCTTCCCGTGGACCCGC 363
|||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 269 TCATTATCTACTCCATTTGGATGCTCCATGAATACAACCGTCACCTTCCCGTCGACCCGC 328
Query 364 CTCCGTCAGCTTCATCAAGCTCCGGAACCGAGATCGCTACTAGTGTATCTGAGCCCTTGA 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CTCCGGCAGCTTCATCAAGCTCCGGAACCGAGATCGCTACTAGTGTATCTGAGCCCTTGA 388
Query 424 AGAATCCTATTGATTTTGTGGCGAGTATCATTCTCGGGTCTAATGGTGGTGATCATGGGT 483
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 389 AGAATCCTATTGATTTCATGGCGAGTATCGTTCTCGGGTCTAATGGTGGTGATCATGGGT 448
Query 484 TTAACCTACGCTCGTTGGACCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGCGGTTG 543
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 449 TTAATCTACGCTCTTTGGATCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGCTGTTG 508
Query 544 GTATATTGGTCTGCATTGTTACCTTCATTGGTTTCATAGCAGCTGAAGCAATCAATGGCT 603
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GTATATTGGTCTGTATTGTTACCTTCATTGGTTTCATAGCAGCTGAAGCAATCAATGGCT 568
Query 604 GTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTCTACTTGAAGCTGCACTTG 663
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 569 GTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTCTCCTCGAAGCTGCACTTG 628
Query 664 TTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCAACTGGAG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCAACTGGAG 688
Query 724 AACTTAGTAGTCTTAGGGCTTTCATTGAAGAAAACATCGATATATGCAAATGGGTGGGGA 783
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 689 AACTCAGTAGTCTTAGGGCCTTCATTGAAGAAAACATCGATATATGCAAATGGGTCGGGA 748
Query 784 TTGCTGTGGTAGCAGTCCAGCTACTGTCATTGCTACTAGCCATGGTTCTCAGAGCGATGG 843
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 749 TTGCTGTTGTAGCAGTCCAGCTACTGTCGTTGCTACTCGCCATGGTTCTCAGAGCTATGG 808
Query 844 TTTCAACCCCGAAACCCGAACTTGACGAAGAGGAAGA-TGATGAGAACCCAAGGAGTAGA 902
||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 809 TTTCAACCCCGAAACCCGAACTTGACGAAGAGGAAGACT-ATGAGAACCCGAGGAGTAGA 867
Query 903 ACTTGGGACCCACTTCTTGGTCCGCAAGGAAACCAAGCGCCTGCTGGCTCAAGCAAGATT 962
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 868 ACTTGGGACCCACTTCTTGGTTCGCAAGGAAACCAAGCGCCTGCTGGGTCAAGCAAAATT 927
Query 963 GAAAACTGGAGCTCCCGAATCAGAGAAAAGTATGGTTTGAACCAGAGTCCACCGGTGAAC 1022
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 928 GAAAACTGGAGCTCCCGAATCAGAGAAAGGTATGGTTTGAACCAGAGTCCACCGGTGAAC 987
Query 1023 CCGAAAGGTTGATGAAGCCAAAT-AATCATGTTTCTAAAACTGCATGTGTCCATATGGTC 1081
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 988 CCGAAAGGTTGATGAAGCCAAATTAA-CATGTTTCTAAAACTGCATGTGTCCATATGGTC 1046
Query 1082 TCTGT--GAAGCTCTCTTTCTCTATGTTTTGCTCTTTGCAACTTCTCGAGTGTGCATAA- 1138
||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1047 TCTCTCTGAAGCTCTCTTTCTCTATGTTT-GCTCTTTGCGACTTCTCGAGTGTGCATAAC 1105
Query 1139 A-----CATTTACTCAAAACAGTGCTGTATTGTGTTTACACAAACGGCATAAGCATCTTC 1193
| |||||||||||||| |||| || ||||||||||||| |||||||||||
Sbjct 1106 ATTAAACATTTACTCAAAACGGTGCCGTCTTGTGTTTACACA-------TAAGCATCTTC 1158
Query 1194 GTTTGTGTGTTTGCTTGTACAAACAATCCTGTGAACAGTTTGAAGTTAGCATTTCCACTA 1253
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1159 GTTTGTGTGTTTGCTTGTATAAACAATCCTGTGAACAGTTTGAAATTAGCATTTCCACTA 1218
Query 1254 TAACGTTTCGATTCAATTTATAATGAAGAAAA-CAAAACTAAAAATTGAATTGGACATCA 1312
|| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 1219 GAAAGTTTCGATTCAATTTATAATGAAAAAAAGCAAAACTAAAATTTGAATTGGACATCA 1278
Query 1313 TAAACAGATTAATGTAAAATGTATA-TGTAGGTTAAACTCTTTCTTAGATTATATCATCT 1371
||||||||||| ||||| | |||| | ||||||||||||||||||||||||||||||||
Sbjct 1279 GAAACAGATTAAAGTAAA-TATATAATATAGGTTAAACTCTTTCTTAGATTATATCATCT 1337
Query 1372 ATATATGTTTCATTATT 1388
|||||||||||||||||
Sbjct 1338 ATATATGTTTCATTATT 1354
> Ahg328819 jgi|Araly1|328819|fgenesh1_pm.C_scaffold_7001046
Length=825
Score = 473 bits (256), Expect = 1e-132
Identities = 442/531 (83%), Gaps = 15/531 (3%)
Strand=Plus/Plus
Query 480 GGGTTT-AACCTACGCTCGTTGGACCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGC 538
|||||| || || || || || || ||||||||||||||||| || ||||||||||||||
Sbjct 270 GGGTTTCAATCTCCGTTCCTTAGATCTTCCTGCTCCATGGTTTATTTACTCTTTCATGGC 329
Query 539 GGTTGGTATATTGGTCTGCATTGTTACCT-TCATTGGTTTCATAGCAGCTGAAGCAATCA 597
|||| || |||||||||||||| | || |||| |||||||| ||||||||||| ||||
Sbjct 330 CATTGGGATTTTGGTCTGCATTGTCA-CTATCATCGGTTTCATTGCAGCTGAAGCTATCA 388
Query 598 ATGGCTGTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTC-TACTTGAAGCT 656
|||| |||||||||||||| || || |||||||||||||| || | || |||| |||||
Sbjct 389 ATGGATGTTGCTTGTGTTTCTATTCAATTCTCAAAACTCTTCTGA-TCATACTCGAAGCA 447
Query 657 GCACTTGTTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCA 716
|| ||||| | ||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 448 GCTCTTGTGGGATATATAGCCATTGACCGTCACTGGGAAAAGGATCTTCCTTATGATCCA 507
Query 717 ACTGGAGAACTTAGTAGTCTTAGGGCTTTCATTGAAGAAAACATCGATATATGCAAATGG 776
||||||||||| | ||||||| | |||||||| ||||||||||||||||| |||||||||
Sbjct 508 ACTGGAGAACTCAATAGTCTTCGAGCTTTCATAGAAGAAAACATCGATATTTGCAAATGG 567
Query 777 GTGGGGATTGCTGTGGTAGC-AGTCCAGCTACTGTCATTGCTACTAGCCATGGTTCTCAG 835
|| ||||||| ||||||||| | ||||| |||||||||||||||| || ||||| | ||
Sbjct 568 GTCGGGATTGTTGTGGTAGCGA-TCCAGTTACTGTCATTGCTACTGGCTTTGGTTTTGAG 626
Query 836 AGCGATGGTTTCAACCCCGA-AACCCGAACTTGACGAAGAGGAAGATGATGAGAACCCAA 894
||| ||||||||| |||||| || | || ||||| || ||||| ||| |||||| ||||
Sbjct 627 AGCTATGGTTTCA-CCCCGACAATCAGAGCTTGATGATGAGGATGATTTTGAGAATCCAA 685
Query 895 GGAGTAGAACTTGGGACCCA-CTTCTTGGTCCGCAAGG-AAACCA-AGCGCCTGCTGGCT 951
||||||| | | || | ||||||||||| || || |||||| | | || |||| |
Sbjct 686 TGAGTAGAGCAAGAGAGA-ATCTTCTTGGTCCACA-GGCAAACCAGA-CATCTTCTGGAT 742
Query 952 CAAGCAAGATTGAAAACTGGAGCTCCCGAATCAGAGAAAAGTATGGTTTGA 1002
||||||| ||||| || ||||| |||||||||||||| ||||| || ||||
Sbjct 743 CAAGCAATATTGACAATTGGAGGTCCCGAATCAGAGAGAAGTACGGATTGA 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5