BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20240.1
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319541 jgi|Araly1|319541|fgenesh1_pm.C_scaffold_3002557 2942 0.0
Ahg480447 jgi|Araly1|480447|fgenesh2_kg.3__3148__AT2G20230.1 167 4e-40
> Ahg319541 jgi|Araly1|319541|fgenesh1_pm.C_scaffold_3002557
Length=2094
Score = 2942 bits (1593), Expect = 0.0
Identities = 1948/2114 (92%), Gaps = 46/2114 (2%)
Strand=Plus/Plus
Query 227 ATGAAAAAGCTCATTGCTCGAGAAATGTCGAAAGATGTTGTTGAAGATAGACAGAGTTCT 286
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGAAAAAGCTCATTGCTCGAGAAATGTCGAACGAGGTTGTTGAAGATAGACAGAGTTCT 60
Query 287 AACAATGTAGTTGCTAAACTAATGGGTCTAGAGACTTCTGCACCAAGGAGCAGATCCAAA 346
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 61 AATAATGTAGTTGCTAAACTAATGGGTCTAGAGACTTCTACACCAAGGAGCAGATCCAGA 120
Query 347 AGCTCTTCACGTTGTTCGTTGACTTGTGT---TGGTAGTAAGGAAGCT-G---G-----T 394
||||||||||| ||||||||||||||||| | ||||||| |||||| | | |
Sbjct 121 AGCTCTTCACGCTGTTCGTTGACTTGTGTGGGTAGTAGTAATGAAGCTGGTAAGTTTCAT 180
Query 395 AAGCATCATAGAGAAGATGAAACCTGGGATC--AA-AAGGCGAGCAACCTTTCAA--GTA 449
|||||||||||||||||||||| |||||||| || |||||||| || || ||
Sbjct 181 AAGCATCATAGAGAAGATGAAATCTGGGATCAGAAGAAGGCGAGGAA--AGGAAAGTGTG 238
Query 450 AAGCAAGTATGAGTGATAAACAGATGGATCTTGTTCGTCGAAAGTTCATGGAAGCTAAAC 509
| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 ATGGAAGTATGAGTGATAAACACATGGATCTTGTTCGTCGAAAGTTCATGGAAG------ 292
Query 510 ACTTGGTAACAGATGATAGGCTTCATAGGTCCAGTGAGTTACAAGAAGCACTCCAAGTTT 569
| | |||||||| | |||||| |||||||||||||| ||||||||||||||||| |
Sbjct 293 ---T-G--ACAGATGACAAGCTTCACAGGTCCAGTGAGTTCCAAGAAGCACTCCAAGTGT 346
Query 570 TAAGTTCTAACAAAGATTTGTTCGTTAAGTTTCTCCAGGAATCAAATTCTTTGTT-TCCA 628
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 347 TAAGTTCTAACAAAGATTTGTTCGTGAAGTTTCTCCAGGAATCAAATTCTTTGTTAT-CT 405
Query 629 CAGCATCTTTCTGACTTTCA--A-CCAGTTCCTCCTCATCCAGATGCTAAGCGCATTACG 685
|||||||||||||||||||| | || ||| |||||||||||| |||||||||||||||
Sbjct 406 CAGCATCTTTCTGACTTTCATCATCCTGTTATTCCTCATCCAGAGGCTAAGCGCATTACG 465
Query 686 GTATTGAGACCTTCAAAGGCTGTTGGTGTTCAGAAATGTTTGGCTGAAGATAGTAAGAAA 745
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 466 GTATTGAGACCTTCAAAGGCTGTTGGTGTTCAAAAATGTTTGGTTGAAGATAGTAAGAAA 525
Query 746 CCAGCTTCTTTGAATCAGGAAACTGGATGGATCGATGCTGTGCAGCCAACTCGGATAGTT 805
|||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 526 CCAGTTTCTTTGAATCAGGAAACTGGATGGATCGATGATGTGCAGCCAACTCGAATAGTT 585
Query 806 GTTTTGAAGCCTAGTCCTGGAAAGTCTCTAGATATAAAGGCTATTGCTTCATCACCTCCT 865
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 586 GTCTTGAAGCCTAGTCCTGGGAAGTCTCTAGATATAAAGGCTATTGCTTCATCTCCTCCT 645
Query 866 TATTTTGATGAGGCTGGAGATGCTGAGACCAGAGAAGTGGCAAAGGAAATTACACGTCAA 925
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 646 TATTTTGATGAGGCTGGAGATGCTGAGACTAGAGAAGTGGCAAAGGAAATTACACGTCAA 705
Query 926 ATACGTGAAACTGTGGAGGGTCATTGCAGGAACGAGACCctttcttcttcttcttcttcC 985
|||||||||||| | |||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 706 ATACGTGAAACTTTTGAGGGTCACTGCAGAAACGAGACCATTTCTTCTTCTTCTTCTTCA 765
Query 986 GTCTTGTCCAATGGCTATATGGGTGATGATTGTTCGTTAAACAGGTCAAATTACGAATAT 1045
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 766 GTCTTGTCCAATGGCTATATCGATGATGATTGCTCGTTAAACAGGTCAAATTACGAATAT 825
Query 1046 CTAGTGGGAAATATTACCAACTCTGAGATCATGTCACCATCCTCTAGGCATTCATGGGAC 1105
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 826 CCAGTGGGAAACATTACCAACTCTGAGATCATGTCACCATCATCTAGGCATTCATGGGAC 885
Query 1106 TGTGCAAACAAGTTTGAGAGTCCTTTTTCTTCGTCTTCGTTGAGCCGAGTCTCGTTTTCT 1165
|||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 886 TGTGCAAATAGGTTTGAGAGTCCTTTTTCTTCCTCTTCGTTCAGCCGAGTCTCGTTTTCT 945
Query 1166 CCAGACTCATCTGTCTACAGAGAGGCAAAGAAACGGCTTTCTGAGAGATGGGCAATGATG 1225
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CCAGACTCATCTGTCTATAGAGAGGCAAAGAAACGGCTTTCTGAGAGATGGGCAATGATG 1005
Query 1226 TCACTAAACGGAGACACACAGCAACCAAAAAACTTCCCCAAGGTTTCAACGGCCTTAGGC 1285
|||||||||| ||||||||| |||||||||||| |||| ||||| ||||||||||||||
Sbjct 1006 TCACTAAACGAAGACACACAACAACCAAAAAACATCCCAAAGGTCTCAACGGCCTTAGGT 1065
Query 1286 GAAGTACTTGCACTTTCAGAGACGAAAGTACCTACCGGATCCAGTGAAGAGACCAACAAA 1345
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1066 GAAGTGCTTGCACTTTCAGAGACGAAAGTACCTACCGGATCCAGTGAAGAGAGCAACAAA 1125
Query 1346 GTGAAACAAGAAACGAGACGATCAATCTCATGCATAGGCAGTGGTCTAGATCAAGTAGAA 1405
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GTGAAGCAAGAAACGAGACGATCAATCTCATGCATAGGCAGTGGTCTAGATCAAGTAGAA 1185
Query 1406 AGCACAAGTGATTCTCTGAATATCCTTGAAAGGTCAAGATCAGTCCCTGAGATTAGGCTC 1465
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1186 AGCACAAGTGATTCTCTGAATACCCTTGAAAGGTCAAAATCAGTCCCTGAGATTAGGCTC 1245
Query 1466 AATGGTGGAACTTCAAAAGCGCAAGCTCCCCAAGAGCTTACGGAGTCAAGAAGCTTAAAG 1525
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 1246 AATGGTGGAACTTCAAAAGCACAAGCTCCCAAAGAGCTTACTGAGTCAAGAAGCTTAAAG 1305
Query 1526 TCATCATGGAAAGTTTCAAGCTTGTTCTTCTTCCGGAATAAAAAATCAAACAAGGACAAG 1585
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1306 TCATCATGGAAAGTTTCAAGCTTATTCTTCTTCCGGAATAAAAAATCATACAAGGACAAG 1365
Query 1586 ACATTTGCACCGTCTCAATTGGCTATACACCGTGATGCATTCCAAGAACAACGTATTTTT 1645
||| || ||| ||||| ||||||||||||||||||||||| ||| || || |||||||
Sbjct 1366 ACAGATGTACCTTCTCAGTTGGCTATACACCGTGATGCATTTCAACAAAAAAATATTTTT 1425
Query 1646 ACAAGCGAGGGTGATGTGGAAAATGAAAACCAGGACCAGCCGAGTCCAGTTTCGGTTTTA 1705
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1426 ACAAGCGAGGGTGATGTGGAAAATGATAACCAGGACCAGCCGAGTCCAGTTTCGGTTTTA 1485
Query 1706 CAGCCGGCTTTCGAAGAGGAATGTTCGGGGTCAGTAAAGCCAAAGACCACTCAAGGAGA- 1764
||||||||||| |||||||||||||| | ||||| |||||||| |||||||||||||||
Sbjct 1486 CAGCCGGCTTTTGAAGAGGAATGTTCTGTGTCAGCAAAGCCAAGGACCACTCAAGGAGAT 1545
Query 1765 AGAAATGTCTCTGAAATCTAATCTGATTGACAAATCACCTCCTATCGGAACAATCGCTCG 1824
| |||||||| ||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 1546 A-AAATGTCTTTGAAATCTAATCTGATTGACAAATCGCCTCCTATTGGGTCAATCTCTCG 1604
Query 1825 GATTCT-CGCATGGGAGGATGAGTCATACACAGAC-ACTAGTAAACCCGCAATGGGAATC 1882
| || | | ||||||||||||||||||||||| || || | |||||||||||| ||||||
Sbjct 1605 GGTT-TGCTCATGGGAGGATGAGTCATACACA-ACCACAACTAAACCCGCAATAGGAATC 1662
Query 1883 GAGGAAGATGAAGACTGGTATGGCTTCATCAAAACGCTCTTAACAGCGTCTGGTTTCAGC 1942
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1663 GAGGAAGATGAAAACTGGTATGGCTTCGTCAAAACGCTCTTAACAGCGTCTGGTTTCAGC 1722
Query 1943 GGTAGTGACTCGCTTATGACCCGTTGGCACTCACTGGAGAGCCCATTAGACCCATCATTG 2002
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1723 GGTAGTGACTCGCTTATGACCCGTTGGCACTCACCGGAGAGCCCATTAGACCCATCATTA 1782
Query 2003 AGAGACAAATTTGCCAACAAGGAACTCATCAAACGCAGAAAACAGAGATCAAACCGCAAA 2062
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1783 AGAGACAAATTTGCCAACAAGGAACTCATCAAACGCAGGAAACAGAGATCAACCCGCAAA 1842
Query 2063 CTCGTTTTTGACTGTGTTAATGCCATCATAACAGAGACAACATCAACACTTGCGCACACC 2122
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1843 CTCGTTTTTGACTGTGTTAATGCCATCATAGCTGAGACAACATCAACACTTGCGCACACC 1902
Query 2123 GGCTTGACCAAGGGATTTAACATGTTGGAGCATGTTTGGACAGAGTTACAGGAATGGGCG 2182
|||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | ||||
Sbjct 1903 GGCTTGACCAAGGGATTTAACATGGTGGAACATGTTTGGACAGCGTTACAGGACTCGGCG 1962
Query 2183 GTTAATGACGAGGTTGCTGGGAAAA-TGTGGAGTTATGGTCTACAAGTCGAAATGAACAA 2241
|| | ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||
Sbjct 1963 GTGAGTGACGAGGTTG-TCGGAAAAATGTGGAGTTATGGTCTACAAGTCGAAACAAACAA 2021
Query 2242 TTTGGGGATTGAAATTGAAGTGATATTGCTGCAAGAGCTTGTTGAAGAAGCAGTCTTCGA 2301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2022 CATGGGGATTGAAATTGAAGTGATATTGCTGCAAGAGCTAGTTGAAGAAGCAGTCTTTGA 2081
Query 2302 TCTTA-TCTGATGA 2314
||||| || |||||
Sbjct 2082 TCTTACTC-GATGA 2094
> Ahg480447 jgi|Araly1|480447|fgenesh2_kg.3__3148__AT2G20230.1
Length=1354
Score = 167 bits (90), Expect = 4e-40
Identities = 110/119 (92%), Gaps = 3/119 (3%)
Strand=Plus/Minus
Query 2347 AATAATGAAACATATATAGATGATATAATCTAAGAAAGAGTTTAACCTACAT-ATACATT 2405
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 1354 AATAATGAAACATATATAGATGATATAATCTAAGAAAGAGTTTAACCTATATTATATATT 1295
Query 2406 TTACATTAATCTGTTTATGATGTCCAATTCAATTTTTAGTTTTG-TTTTCTTCATTATA 2463
| || ||||||||||| ||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 1294 T-ACTTTAATCTGTTTCTGATGTCCAATTCAAATTTTAGTTTTGCTTTTTTTCATTATA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92825927065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5