BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20250.1
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906345 jgi|Araly1|906345|Al_scaffold_0003_3473 2534 0.0
> Ahg906345 jgi|Araly1|906345|Al_scaffold_0003_3473
Length=1728
Score = 2534 bits (1372), Expect = 0.0
Identities = 1621/1739 (93%), Gaps = 25/1739 (1%)
Strand=Plus/Plus
Query 162 ATGAGAAGAAGGAATCAGCGAACGAAAGCTGGCGAAACCCTAAATAAGACCGATCCACAA 221
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 1 ATGAGAAGAAGGAATCAGCGAACGAAAGCTGACGAAACCCCAAAGAAGACCGATCCACAA 60
Query 222 ATCGGATTCAAGTTTACTGATCCTTCGAGCGCTCGAGCAAATTCAGATTTGAAACGCAGG 281
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 61 ATCGGATTCAAGTTTACTGATCCTTGGAGCTCTCGAGCAAATTCAGATTTGAAACGCAGG 120
Query 282 AGAAGGGTGAGTTTCGACGATGCTGATCATCGGAGTCCCTTGAACGAATCTCAGGCCGGA 341
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGGGTGAGTTTCGACGATGTTGATCATCGGAGTCCCTTGAACGAATCTCAGGCCGGA 180
Query 342 GGATCGATTGATGCCAAGACCTCTGAGTTTGCATTCTTTAAGAAGTTAAAGTCTAATTTT 401
||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||
Sbjct 181 GGATCGATTGATGCCAAGACCTCGGAGTTTGCGTTCTTTAAGAAGCAAAAGTCTGGTTTT 240
Query 402 GGTCACTGCTCTGAATCTTCTGATTCTAAACCATCAAATAAAGTTCA-ACAAATTCCTAA 460
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 241 GGTCACTGCTCTGAATCTTCTGATTCTAAACAATCAAATAAAGTTCAGA-AAATTCCTAA 299
Query 461 AACCTTCGAATCCAGAGCCAAACCAGACAAAGGATGTGCAGGAACGGACTGCGACGATAA 520
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 300 AACCTTCGAATCCAGAGCCAAACCAG---TAGAACATGCAGGAACGGACTGCGACGATAA 356
Query 521 TGGTAGATCCAAGAGCTATAGCTTCTCCACACCCATTCATAGTGCCAGACGTGGGTCGTC 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGGTAGATCCAAGAGCTATAGCTTCTCCACACCCATTCATAGTGCCAGACGTGGGTCGTC 416
Query 581 TATGTTACATGCCAACTTGACTCAAAGGGATAGAGGAAAATG-TAATGGGAGATCTTCTT 639
||||| ||||| |||||||||||| ||||||||||||| | | |||||||| ||||||||
Sbjct 417 TATGTCACATGTCAACTTGACTCAGAGGGATAGAGGAAGA-GATAATGGGAAATCTTCTT 475
Query 640 CATCATTCAGTAGAGATA-GGTACACAGTTCCAAGTGGTGACAATCTGAGATCTGAAAGT 698
||||||||||| |||||| || ||||| ||||||||||| |||| |||||||||| ||||
Sbjct 476 CATCATTCAGTGGAGATAAGG-ACACAATTCCAAGTGGTAACAACCTGAGATCTGGAAGT 534
Query 699 GGAGGAATCAGTGAAGAGAAAGGAGATATATTCTCTGTGAAGAGAAAGAAACTGCATCAG 758
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GGAGGAATCAGTGAAGAGAAAGGAGATATATTCTCTGTGAAGAGAAAGAAACTGCATCAT 594
Query 759 TGGGTCAAAGATACATGGCTTACTGAAATCCCTGAGCTTACCTCAAACGGGCATGATTTA 818
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTGGTCAAAGATACATGGTTTTCTGAAATCCCTGAGCTTACCTCAAACGGGCATGATTTA 654
Query 819 GTTTCTGTTCTCCTAACTCGGCTGTCCCCTGGTACGGAGGAGACACAGCCTTCTAGGTTT 878
|||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 655 GTTTCTATACTCCTAACTCGGCTGTTCCCTAGTACGGAGGAGACACAGCCTTCTAGGTTT 714
Query 879 TCCAAGGAGACGACGGCCAGAGTCAAAAGAAGAACGTTTGTTGAATCTCCTGGCTCAAAG 938
|||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 715 TCCAAGGAGAGGACGGATAGAGTTAAAAGAAGAACGTTTGTTGATTCTCCTGGCTCAAAG 774
Query 939 TTTCTTAAGAGGTCCCATGAAAGCTATGCAGAAGTTGACCACAGTCTGCATATGGAAAGG 998
||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 775 TTTCTCAAGAGGTCTCATGAAAGCTATACAGAAGTTGACCACAGTCTGCAAATGGATAGG 834
Query 999 GAGAGATTGATATCTTGGCAGGGATGGCTGGAAAATAACATTACCCCGAGGCTGCAGTAT 1058
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GACAGATTGATCTCTTGGCAGGGATGGCTGGAAAATAACATTACCCCGAGGCTGCAGTAT 894
Query 1059 CCT-CA---C--GTTCAGAGCAGTTTCATCCCAAGAGATTCCGAAGAGATTAGCTTTCCC 1112
|| || | |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 895 CCAACAGGTCATGTTCAGAGCACTTTCATCCCAAGAGATCCCGAAGAGATTAGCTTTCCC 954
Query 1113 ATCTTATATCCTAAGGAATCAGTTTATCGACCTCCACTGTTGAAACAGAAGGAGT-TCCT 1171
|||||||||||||||||||| |||||| ||||| ||||||||||||||||| || || |
Sbjct 955 ATCTTATATCCTAAGGAATCGGTTTATAAACCTCTACTGTTGAAACAGAAGGCGTGTC-T 1013
Query 1172 GTCGTTTCCTGTTGAAGAAAATTTGGAGTGTTCTCCCATATCTAGCCTCCATTTCAGAAA 1231
|||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 1014 GTCGCTTCCTGTTGAAGAAAATTTTGACTGTTCTCCCATATCTAGCCTCCATTTTAGAAA 1073
Query 1232 CTACAAGCCTTTTTCAATGGATTATCACAGAGGAGAAATTGGATACAGCACAGAGGACTT 1291
|||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1074 CTACAAGCCTCTTTCAATGGATTATCACAGAGGAGAAACTGGATACAGCTCAGAGGACTT 1133
Query 1292 ATCACACGAACATAGAGAGCCTTCATCTGCATTACTTCTCGAGTGGAATACTGAAACCGC 1351
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 ATCACACGAACATAGAGAGCCTTCATCGGCATTACTTCTCGAGTGGAATACTGAAACCGC 1193
Query 1352 AAGCACCAGAAAGACAGATGATTTTCCACTTAGTTATCACACAAGACTCATCACGTATCC 1411
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1194 AAGCACCAGAAAGACAGATGATTTTCCACTTAGTTATCGCACAAGACTCATCACGTATCC 1253
Query 1412 AAATGCATCATCCTCATCTTTGACAGACAATCCATGGTGCTCTGACTATTCTTCATCCCA 1471
|| |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 1254 AACTGCATCATCCTCATCTTTGACAGATAATCCATGGAACTCTGACTTTTCTTCATCCCA 1313
Query 1472 TGATTTGGTTAC-AAGGGAGCTGTACCCTTTACCTCTGCTCTCTCATTCCATTTCAGGCA 1530
|||||||||||| || | |||||||||||||||||||||||||||||| || ||||||||
Sbjct 1314 TGATTTGGTTACGAAAG-AGCTGTACCCTTTACCTCTGCTCTCTCATTACACTTCAGGCA 1372
Query 1531 GTTTCCTCTTACCAACAACGAACCAAGCCAGCCATTTTGAGCATGATGAACTCGAGAGGT 1590
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1373 GTTTCCTCTTACCAGCAACGAACCATGCCAGCCATTTTGAGCATGATGAACTCGAGAGGT 1432
Query 1591 ATATTATTGATGACGAAGACGTGGTTGCTGCAAACCAAGAG-CTCCAGACATTTCATCAC 1649
||||||||| ||||||||||||||||||||||||||| || ||||| |||| ||| | |
Sbjct 1433 ATATTATTGGTGACGAAGACGTGGTTGCTGCAAACCA-GAATCTCCACACATCTCACCGC 1491
Query 1650 ACAAACAGCTCAGATTGTTTAACCAGAGATTACACATATTATCGTAATCTTTCAAACTCT 1709
||||| ||||||||||||||||| ||||| |||| | | |||| ||||||||||||||||
Sbjct 1492 ACAAATAGCTCAGATTGTTTAACAAGAGACTACATAAACTATCATAATCTTTCAAACTCT 1551
Query 1710 C-TAGTGGATCATTGTCCTTTTAAAGTCCCTGGATGTGACATAGTATCCTTTCCATTTTC 1768
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1552 CCT-GTGGATCATTGTCCTTTTAAAGTCCCTGGATGTGAAATAGTATCCTTTCCATTTTC 1610
Query 1769 CAGCATCAGCAATTCAAATTTGTTGGAAGCGTCAAGTCCTACA-ACGAGTAATCGTTTTA 1827
||||||||||||||||||| ||||||||||||||||||||| | | |||| |||||||||
Sbjct 1611 CAGCATCAGCAATTCAAATATGTTGGAAGCGTCAAGTCCTAGACA-GAGTGATCGTTTTA 1669
Query 1828 AGTCTCATGATTGGATCCCCTTTCAGTTTCAGTCACCTCAAGTTTGGATTGATTCATAG 1886
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1670 AGTCTCATGACTGGATCCCCTCTCAGTTTCAGTCACCTCAAGTTTGGATTGATTCATAG 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82236838955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5