BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20270.2 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg931350 jgi|Araly1|931350|scaffold_303807.1 507 7e-143 > Ahg931350 jgi|Araly1|931350|scaffold_303807.1 Length=609 Score = 507 bits (274), Expect = 7e-143 Identities = 338/367 (92%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 36 AAATCGCCATGGTAGCCGCAACAGTAAACCTCGCGAACATGACATGGACGTCGTTAAATT 95 ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| Sbjct 13 AAATCGCCATGGTAGCCGCAACAGTTAACCTCGCAAACATGACATGGACGTCGCTAAATT 72 Query 96 CAAATCCAGCAATCTCTTTCTCCATGTTAAGCGGAATCAGAAACTTGGGCATGTTACCTT 155 ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 73 CAAATCCAGCACTCTCTTTCTCCATGTTAAGCGGAATCAGAAGCTTGGGTATGTTACCTT 132 Query 156 TCAGGAGATGTCTAAAGCCGACAGTTATCGGAATCGCGTCGTGGCCACCACTCCGTTGTT 215 | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 133 TGAGGAGATGTCTAAAGCCGACAGTAATCGGAATCGCGTCGTGGCCACCACAACGTTGTT 192 Query 216 CTTCTGTTAAGGCTATGTCTTCATCATCGTCTTCGTCTGGATCGACATTGGAGGAGACTG 275 ||||||||| ||| |||||||||| ||| | ||||||||||||||||||| Sbjct 193 CTTCTGTTAGGGCCATGTCTTCAT--TCG-----G-----ATCGACATTGGAGGAGACTA 240 Query 276 TTAAAACGACTGTGGCAGAGAACCCTGTCGTTGTTTACTCCAAAACCTGGTGCTCATACT 335 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 241 TTAAAACGACTGTGGCAGAGAACCCTGTCGTTGTTTACTCCAAAACCTATTGCTCATACT 300 Query 336 CGTCTCAAGTGAAGTCCTTGTTCAAGAGTCTTCAAGTTGAGCCACTGGTTGTTGAATTGG 395 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGTCTGAAGTGAAGTCCTTGTTCAAGAGTCTTCAAGTTGAGCCACTGGTTGTTGAATTGG 360 Query 396 ATCAACT 402 || |||| Sbjct 361 ATGAACT 367 Score = 316 bits (171), Expect = 1e-85 Identities = 193/204 (95%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 486 GTTCAGAAGGGTCGCAGCTGCAGAATGTGTTGGAGAAAATTACTGGACAATACACTGTTC 545 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 GTTCAGAGGGGCCGCAGCTGCAGAATGTGTTGGAGAAAATTACTGGACAATACACTGTTC 465 Query 546 CCAATGTTTTCATCGGAGGCAAGCACATTGGTGGCTGCTCAGATACATTGCAGCTGCACA 605 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 466 CTAATGTTTTCATCGGAGGCAAGCACATTGGTGGCTGCTCAGATACATTGCAGCTGTACA 525 Query 606 ATAAAGGAGAGCTGGAAGCAATTTTAGCTGAAGCCAATGGAAAAAACGGTCAGACCTAGA 665 |||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 526 ATAAAGGAGAGCTGGAGGCAATGTTAGCTGAAGCCAATGGAAAAACCGGTCAAACCTAGA 585 Query 666 GATTTCTAGAGATGAAACTGGTTG 689 ||||| || |||||||||||||| Sbjct 586 GATTTTTACTGATGAAACTGGTTG 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5