BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20270.2

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931350 jgi|Araly1|931350|scaffold_303807.1                        507    7e-143


> Ahg931350 jgi|Araly1|931350|scaffold_303807.1
Length=609

 Score =  507 bits (274),  Expect = 7e-143
 Identities = 338/367 (92%), Gaps = 12/367 (3%)
 Strand=Plus/Plus

Query  36   AAATCGCCATGGTAGCCGCAACAGTAAACCTCGCGAACATGACATGGACGTCGTTAAATT  95
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct  13   AAATCGCCATGGTAGCCGCAACAGTTAACCTCGCAAACATGACATGGACGTCGCTAAATT  72

Query  96   CAAATCCAGCAATCTCTTTCTCCATGTTAAGCGGAATCAGAAACTTGGGCATGTTACCTT  155
            ||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  73   CAAATCCAGCACTCTCTTTCTCCATGTTAAGCGGAATCAGAAGCTTGGGTATGTTACCTT  132

Query  156  TCAGGAGATGTCTAAAGCCGACAGTTATCGGAATCGCGTCGTGGCCACCACTCCGTTGTT  215
            | ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||
Sbjct  133  TGAGGAGATGTCTAAAGCCGACAGTAATCGGAATCGCGTCGTGGCCACCACAACGTTGTT  192

Query  216  CTTCTGTTAAGGCTATGTCTTCATCATCGTCTTCGTCTGGATCGACATTGGAGGAGACTG  275
            ||||||||| ||| ||||||||||  |||     |     ||||||||||||||||||| 
Sbjct  193  CTTCTGTTAGGGCCATGTCTTCAT--TCG-----G-----ATCGACATTGGAGGAGACTA  240

Query  276  TTAAAACGACTGTGGCAGAGAACCCTGTCGTTGTTTACTCCAAAACCTGGTGCTCATACT  335
            ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  241  TTAAAACGACTGTGGCAGAGAACCCTGTCGTTGTTTACTCCAAAACCTATTGCTCATACT  300

Query  336  CGTCTCAAGTGAAGTCCTTGTTCAAGAGTCTTCAAGTTGAGCCACTGGTTGTTGAATTGG  395
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGTCTGAAGTGAAGTCCTTGTTCAAGAGTCTTCAAGTTGAGCCACTGGTTGTTGAATTGG  360

Query  396  ATCAACT  402
            || ||||
Sbjct  361  ATGAACT  367


 Score =  316 bits (171),  Expect = 1e-85
 Identities = 193/204 (95%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  486  GTTCAGAAGGGTCGCAGCTGCAGAATGTGTTGGAGAAAATTACTGGACAATACACTGTTC  545
            ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  GTTCAGAGGGGCCGCAGCTGCAGAATGTGTTGGAGAAAATTACTGGACAATACACTGTTC  465

Query  546  CCAATGTTTTCATCGGAGGCAAGCACATTGGTGGCTGCTCAGATACATTGCAGCTGCACA  605
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  466  CTAATGTTTTCATCGGAGGCAAGCACATTGGTGGCTGCTCAGATACATTGCAGCTGTACA  525

Query  606  ATAAAGGAGAGCTGGAAGCAATTTTAGCTGAAGCCAATGGAAAAAACGGTCAGACCTAGA  665
            |||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||
Sbjct  526  ATAAAGGAGAGCTGGAGGCAATGTTAGCTGAAGCCAATGGAAAAACCGGTCAAACCTAGA  585

Query  666  GATTTCTAGAGATGAAACTGGTTG  689
            ||||| ||  ||||||||||||||
Sbjct  586  GATTTTTACTGATGAAACTGGTTG  609



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32556971118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5