BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20280.1
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480442 jgi|Araly1|480442|fgenesh2_kg.3__3143__AT2G20280.1 2113 0.0
> Ahg480442 jgi|Araly1|480442|fgenesh2_kg.3__3143__AT2G20280.1
Length=1261
Score = 2113 bits (1144), Expect = 0.0
Identities = 1224/1262 (97%), Gaps = 7/1262 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCCAAAGCAACAACCAAAGGCTGATTTGGCGAAGAAGCAGAAACAAGTGGAAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTCCAAAGCAACAACCAAAGGCTGATTTGGCGAAGAAGCAGAAACAAGTGGAAGAC 60
Query 61 AAAACTTTCGGATTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTTCAGAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAACTTTCGGATTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTTCAGAGT 120
Query 121 CTCAAGCAATCTGTTCAGCCTAAACCCGATGCAACTAAAGCTGCAGCTAAGAAAAAGAAA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAAGCAATCTGTGCAGCCTAAACCCGATGCAACTAAAGCTGCAGCTAAGAAAAAGAAA 180
Query 181 GAGGAAGAGAAAGCGAGAGAACAGGAATTGAATGAGTTGTTCAAGGTAGCTATTAGTCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAAGAGAAAGCGAGAGAACAGGAATTGAATGAGTTGTTCAAGGTAGCTATTAGTCAG 240
Query 241 CCCAAAGTTCCTGTAGGTGTGGATCCAAAGTCTATACTCTGTGAGTTTTTCAAGGCCGGG 300
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 241 CCGAAAGTTCCTGTAGGTGTGGATCCTAAGTCTATACTGTGTGAGTTTTTCAAGGCAGGG 300
Query 301 CAGTGTCAAAAGGGTTTCAAGTGCAAATTCTCTCATGATTTGAACATTCAAAGGAAGGGT 360
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 CAGTGTCAGAAGGGTTTCAAGTGCAAATTTTCTCACGATTTGAACATTCAAAGGAAGGGT 360
Query 361 GAGAAGATTGATATTTACAGTGATACGCGTGATGAAGATGGAGATATGGATGAGTGGGAT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAAGATTGATATTTACAGCGATACGCGTGATGAAGATGGAGATATGGATGAGTGGGAT 420
Query 421 CAAGAGACCCTTGAAAAGGTTGTTGAATCAAAGAAAAATGAATATAATCAGAATAAGCCA 480
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 421 CAAGAGACCCTTGAAAAGGTTGTGGAATTAAAGAAAAATGAATATAATCAGAATAAGCCA 480
Query 481 ACAGATATCGTTTGCAAGTATTTTCTGGATGCTGTGGAAAAGAAACAGTATGGGTGGTTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAGATATCGTTTGCAAGTATTTTCTGGATGCTGTGGAAAAGAAACAGTATGGGTGGTTC 540
Query 541 TGGTCATGCCCCAATGGTGGCAAAGAGTGTCATTACAGACACGCGCTTCCTCCTGGATAT 600
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGTCGTGCCCCAATGGTGGCAACGAGTGTCATTACAGACACGCGCTTCCTCCTGGATAT 600
Query 601 GTCCTTAAATCTCAAATGAAAGCCCTCTTGGAAGAGGAGTCATCGAAGAAGCTGGCAGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCCTTAAATCTCAAATGAAAGCCCTCTTGGAAGAGGAGTCATCGAAGAAGCTGGCAGTT 660
Query 661 GAGGACGAAATCGAAAACGAGCGTGCAAAACTGCAAACCGCAACACAAATGACTCCTGCA 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GAGGACGAAATTGAAAACGAGCGTGCAAAACTGCAAACCGCAACACAAATGACCCCTGCA 720
Query 721 CTATTTATGGAATGGAAGAGGAAGAAAATTGCTGAGAGAGATGCCGGTTTGGCTGCTTCT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CTATTTATGGAATGGAAGAGGAAGAAAATAGCTGAGAGAGATGCCGGTTTGGCTGCTTCT 780
Query 781 CAAGCGGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCCAATGCA 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAAGCAGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCCAATGCA 840
Query 841 AGCTTGTTTGTGGATGATGCTGAGGCTTGTGAAGAATACGAGAGGGAAAGAGAGCAGGAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGCTTGTTTGTGGATGATGCTGAGGCTTGTGAAGAATACGAGAGGGAAAGAGAGCAGGAA 900
Query 901 GAGACTGAACAAAAGGCAAAGAACAAAGAAGCAGAGGCAGGGACAAGCAAGAGTAGTGGt 960
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 GAGACTGAACAAAAGGCAAAGAACAAAGAAACAGAGGCAGGGACAAGCAAGAGTAGTGGT 960
Query 961 gatgctgaacagagttcgaaagaagtcaatgaagaagaagaaga---tgacgatgatgat 1017
||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||
Sbjct 961 GATGCTGAACAGAGTTCGAAAGAAGTCGATGAAGAAGAAGAAGAAGATGAAGACGATGAT 1020
Query 1018 gatgatgacctagacatggatgagctggatgaaTTGGAAGCAAGCTTGTCGAAAACATCG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATGATGACCTAGACATGGATGAGCTGGATGAATTGGAAGCAAGCTTGTCGAAAACATCG 1080
Query 1078 ATCCAGATTCGTGAGCCAAACGACGAAGGGTCATCTTGAAATGAAAAATGGTCTAAGAGG 1137
||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 1081 ATCCAGATTCGTGAGCCAAACAATGAAGGGTCATCTTGAGATGAAAAATGGTCTAAGAGA 1140
Query 1138 AAGAGGTGGAGGAG-AGA-AA-GCACATGTTTTGTTTTTGTGTACTTTCAATAGATTGGA 1194
|||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 1141 AAGAGGTGGAGGAGGAGAGAAAGCACATGTTTTGTTTT-GTGTACTTTCAATAGATTGGA 1199
Query 1195 TTTTGCAGACACAAACCCCATTTTGGGGTGTTGAATAATTTCTGTTACTGTTTTACAGTC 1254
||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| ||||
Sbjct 1200 TTTTGCAGACACAAATCCCATTTTGGAATGTTGAATAATCTCTGTTATTGTTTTAAAGTC 1259
Query 1255 TT 1256
||
Sbjct 1260 TT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5