BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20280.1 Length=1259 Score E Sequences producing significant alignments: (Bits) Value Ahg480442 jgi|Araly1|480442|fgenesh2_kg.3__3143__AT2G20280.1 2113 0.0 > Ahg480442 jgi|Araly1|480442|fgenesh2_kg.3__3143__AT2G20280.1 Length=1261 Score = 2113 bits (1144), Expect = 0.0 Identities = 1224/1262 (97%), Gaps = 7/1262 (1%) Strand=Plus/Plus Query 1 ATGCCTCCAAAGCAACAACCAAAGGCTGATTTGGCGAAGAAGCAGAAACAAGTGGAAGAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCCTCCAAAGCAACAACCAAAGGCTGATTTGGCGAAGAAGCAGAAACAAGTGGAAGAC 60 Query 61 AAAACTTTCGGATTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTTCAGAGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAACTTTCGGATTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTTCAGAGT 120 Query 121 CTCAAGCAATCTGTTCAGCCTAAACCCGATGCAACTAAAGCTGCAGCTAAGAAAAAGAAA 180 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCAAGCAATCTGTGCAGCCTAAACCCGATGCAACTAAAGCTGCAGCTAAGAAAAAGAAA 180 Query 181 GAGGAAGAGAAAGCGAGAGAACAGGAATTGAATGAGTTGTTCAAGGTAGCTATTAGTCAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAGGAAGAGAAAGCGAGAGAACAGGAATTGAATGAGTTGTTCAAGGTAGCTATTAGTCAG 240 Query 241 CCCAAAGTTCCTGTAGGTGTGGATCCAAAGTCTATACTCTGTGAGTTTTTCAAGGCCGGG 300 || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 241 CCGAAAGTTCCTGTAGGTGTGGATCCTAAGTCTATACTGTGTGAGTTTTTCAAGGCAGGG 300 Query 301 CAGTGTCAAAAGGGTTTCAAGTGCAAATTCTCTCATGATTTGAACATTCAAAGGAAGGGT 360 |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 301 CAGTGTCAGAAGGGTTTCAAGTGCAAATTTTCTCACGATTTGAACATTCAAAGGAAGGGT 360 Query 361 GAGAAGATTGATATTTACAGTGATACGCGTGATGAAGATGGAGATATGGATGAGTGGGAT 420 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAGAAGATTGATATTTACAGCGATACGCGTGATGAAGATGGAGATATGGATGAGTGGGAT 420 Query 421 CAAGAGACCCTTGAAAAGGTTGTTGAATCAAAGAAAAATGAATATAATCAGAATAAGCCA 480 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 421 CAAGAGACCCTTGAAAAGGTTGTGGAATTAAAGAAAAATGAATATAATCAGAATAAGCCA 480 Query 481 ACAGATATCGTTTGCAAGTATTTTCTGGATGCTGTGGAAAAGAAACAGTATGGGTGGTTC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ACAGATATCGTTTGCAAGTATTTTCTGGATGCTGTGGAAAAGAAACAGTATGGGTGGTTC 540 Query 541 TGGTCATGCCCCAATGGTGGCAAAGAGTGTCATTACAGACACGCGCTTCCTCCTGGATAT 600 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 541 TGGTCGTGCCCCAATGGTGGCAACGAGTGTCATTACAGACACGCGCTTCCTCCTGGATAT 600 Query 601 GTCCTTAAATCTCAAATGAAAGCCCTCTTGGAAGAGGAGTCATCGAAGAAGCTGGCAGTT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTCCTTAAATCTCAAATGAAAGCCCTCTTGGAAGAGGAGTCATCGAAGAAGCTGGCAGTT 660 Query 661 GAGGACGAAATCGAAAACGAGCGTGCAAAACTGCAAACCGCAACACAAATGACTCCTGCA 720 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 661 GAGGACGAAATTGAAAACGAGCGTGCAAAACTGCAAACCGCAACACAAATGACCCCTGCA 720 Query 721 CTATTTATGGAATGGAAGAGGAAGAAAATTGCTGAGAGAGATGCCGGTTTGGCTGCTTCT 780 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 721 CTATTTATGGAATGGAAGAGGAAGAAAATAGCTGAGAGAGATGCCGGTTTGGCTGCTTCT 780 Query 781 CAAGCGGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCCAATGCA 840 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CAAGCAGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCCAATGCA 840 Query 841 AGCTTGTTTGTGGATGATGCTGAGGCTTGTGAAGAATACGAGAGGGAAAGAGAGCAGGAA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AGCTTGTTTGTGGATGATGCTGAGGCTTGTGAAGAATACGAGAGGGAAAGAGAGCAGGAA 900 Query 901 GAGACTGAACAAAAGGCAAAGAACAAAGAAGCAGAGGCAGGGACAAGCAAGAGTAGTGGt 960 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 901 GAGACTGAACAAAAGGCAAAGAACAAAGAAACAGAGGCAGGGACAAGCAAGAGTAGTGGT 960 Query 961 gatgctgaacagagttcgaaagaagtcaatgaagaagaagaaga---tgacgatgatgat 1017 ||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||| Sbjct 961 GATGCTGAACAGAGTTCGAAAGAAGTCGATGAAGAAGAAGAAGAAGATGAAGACGATGAT 1020 Query 1018 gatgatgacctagacatggatgagctggatgaaTTGGAAGCAAGCTTGTCGAAAACATCG 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 GATGATGACCTAGACATGGATGAGCTGGATGAATTGGAAGCAAGCTTGTCGAAAACATCG 1080 Query 1078 ATCCAGATTCGTGAGCCAAACGACGAAGGGTCATCTTGAAATGAAAAATGGTCTAAGAGG 1137 ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| Sbjct 1081 ATCCAGATTCGTGAGCCAAACAATGAAGGGTCATCTTGAGATGAAAAATGGTCTAAGAGA 1140 Query 1138 AAGAGGTGGAGGAG-AGA-AA-GCACATGTTTTGTTTTTGTGTACTTTCAATAGATTGGA 1194 |||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||||| Sbjct 1141 AAGAGGTGGAGGAGGAGAGAAAGCACATGTTTTGTTTT-GTGTACTTTCAATAGATTGGA 1199 Query 1195 TTTTGCAGACACAAACCCCATTTTGGGGTGTTGAATAATTTCTGTTACTGTTTTACAGTC 1254 ||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |||| Sbjct 1200 TTTTGCAGACACAAATCCCATTTTGGAATGTTGAATAATCTCTGTTATTGTTTTAAAGTC 1259 Query 1255 TT 1256 || Sbjct 1260 TT 1261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47043679578 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5