BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20310.1
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319882 jgi|Araly1|319882|fgenesh1_pm.C_scaffold_3002898 1319 0.0
> Ahg319882 jgi|Araly1|319882|fgenesh1_pm.C_scaffold_3002898
Length=1341
Score = 1319 bits (714), Expect = 0.0
Identities = 925/1025 (90%), Gaps = 21/1025 (2%)
Strand=Plus/Plus
Query 351 TGACGACGACGATGATGATGATGTGCTTGTAGTGGGTCAAAAGGGTGAGATAGCATGTAG 410
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TGATGATGATGATGATGATGATGTGCTTGTAGTGGGTCAAAAGGGTGAGATAGCATGTAG 380
Query 411 AGATTTCCCTCATCCGCGACATTCGTGTGCTAAGTATGCGTTCAACTCAACATCACATGA 470
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 381 AGATTTCCCACATCCTCGACATTCGTGTGCTAAGTATGCGTTTAACTCAACATCACACGA 440
Query 471 GAAGTACTGTGACATGTGTCATTGTTATGTGTGTGACATCCGTGCTCCGTGTCCATACTG 530
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 441 GAAGTACTGTGACATGTGTCACTGTTATGTGTGTGACATCCGTGCTCCATGTCCATACTG 500
Query 531 GTGTATCGCTGTCTCCTCCATAGATCATTGTCATGCTAATGATAAAGAGAAGATATGGAA 590
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GTGTATTGCTGTCTCCAGCATAGATCATTGTCATGCTAATGATAAAGAGAAGATATGGAA 560
Query 591 GAATCAACGTGAATACTTCAGGACAGGATACATGCCTACCGCACC-ATCTTCAAAACCTA 649
|||||||||||||||||||||||| ||||||||||||||| |||| | |||| |||||||
Sbjct 561 GAATCAACGTGAATACTTCAGGACGGGATACATGCCTACCCCACCGA-CTTCGAAACCTA 619
Query 650 CTCCAAGTATTTTACGGGTACCCAAAAACACTTTGCTTCGGAAAAACCATGTTGAGATCC 709
|||||||||| |||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 620 CTCCAAGTATCTTACGGGTGTCTAAAAACACTTTGCTTCGGAAC--CCG-GTTGAGATCC 676
Query 710 GGCCTTGTTCATCATCTACCCGTGTTGCTAATCCTTCAAGTGTCAAAGCCAGGCATAGAA 769
||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 677 GGCGTTGTTCATCATCTACCCGTGTTGCTAATCCCTCAAGCGTCAAAGCCAGGCATAGAA 736
Query 770 TCAGGCAACCGATTCCGCACAATCAAGGGTTGCAGAGTCAACCGGCACAGTCATTAAGCA 829
||||||||||||| || |||||||||||||||||||||||||| || |||||||| |||
Sbjct 737 TCAGGCAACCGATCCCTCACAATCAAGGGTTGCAGAGTCAACCTGCGCAGTCATTGAGCG 796
Query 830 CTGTTCGCGACAGCGTGATCCAAAAGGATAGAAGTTCTTATAGGTTTAGCCTACGATCCC 889
||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 797 GTGTTCGCAACAGCGTGATCCAAAAGGATAGAAGCTCTTATAAGTTTAGCCTACGATCCC 856
Query 890 GAGTAGCCTCTTCTGCGGGAAATGGTATCAGCATCCGATTTAACAATGCTCAAGTTTCAC 949
||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||
Sbjct 857 GAGTAGCCTCTTCTGCGGGAAATGGTAACAACATCCGATATAGCAATGCTCAAGTTTCAC 916
Query 950 AATCCAGTCACCATAGCTCTTCCACAGTGGCACCTACATTAAACCCGGAAACGTACACTC 1009
||||||| ||||||||||||||| ||||||||| ||| ||||||||||| ||||||||
Sbjct 917 AATCCAGCCACCATAGCTCTTCCTTAGTGGCACCGACAAAAAACCCGGAAATGTACACTC 976
Query 1010 AACAACGCAAT-----G-----T-TC-GTGATCATTGCACAGCGCTACCTGGTTCTCAGA 1057
||||||||||| | | | |||||||||||||||||||||||||||| ||||
Sbjct 977 AACAACGCAATTACCAGCCCAATGTTAGTGATCATTGCACAGCGCTACCTGGTTCACAGA 1036
Query 1058 GCAACGTGTTCACTCGACA-TGCAGACCAGAACATACGTGGTAGTGGAAATCGTCAGTTT 1116
|||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GCAATATGTACACTCGACAGT-CAGACCAGAACATACGTGGTAGTGGAAATCGTCAGTTT 1095
Query 1117 CAGACAAATGTGGATCGGTTTGCTCCGTCCAAAGCTCCTCTTACTGCTGAAGATTCGCAT 1176
|||||| ||||| ||| |||||||||||| |||||||||||||||||| |||| | ||
Sbjct 1096 CAGACACATGTGAATCTGTTTGCTCCGTCGGAAGCTCCTCTTACTGCTGCAGATCCACAA 1155
Query 1177 ACAGCTACGGTACAACAGCAACCAGGGATTAATGAAAACGTCTTGGAGACCAAACTATCG 1236
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1156 ACAGAGACGGTACAACAGCAACTAGGGACAAATGAAAACGTCTTGGAGACCAAACTATCG 1215
Query 1237 GAATTTGAGAAATGGCTAATGGAAAATCCTAACCCAACCGGCCCTGTTAGTCCGTTACCT 1296
||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||
Sbjct 1216 GAATTTGAGAACTGGCTAATGGAAAATCCTAACCAAACCGGCGCGGTTAGTCCGTTGCCC 1275
Query 1297 GAACCGGGAAATCAAGACTATGCT-AGTACGTTGTCATTTGATTTTGAAACATTTTTGAA 1355
||||||| | | ||||||||| | | |||||||| ||||||||| ||||| || |||||
Sbjct 1276 GAACCGGTAGGTGAAGACTATGTTGA-TACGTTGTTATTTGATTTCGAAACCTTCTTGAA 1334
Query 1356 TGATT 1360
|||||
Sbjct 1335 TGATT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5