BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20320.1
Length=3506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906841 jgi|Araly1|906841|Al_scaffold_0003_3969 1736 0.0
> Ahg906841 jgi|Araly1|906841|Al_scaffold_0003_3969
Length=2910
Score = 1736 bits (940), Expect = 0.0
Identities = 1015/1052 (96%), Gaps = 2/1052 (0%)
Strand=Plus/Plus
Query 1484 AGGTAGCAGATGATGCGACATTGTATGGTGTTTGCTTACATGTCTCGGAGATTGTTCAGA 1543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AGGTAGCAGATGATGCGACATTGTATGGTGTTTGCTTACATGTCTCGGAGATTGTTCAGC 1309
Query 1544 GACCCCCTGGTGTATTAAGCACTGCGTCACCCTTGCATTCATCTGGAGGAGGCAGTCGTT 1603
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1310 GACCCCCTGGTGTATTAAGCACTGCATCACCCTTGCATTCATCTGGAGGAGGCAGTCGTT 1369
Query 1604 TTTTGGTTTCTGCACCTCGATGCTACTGCTTGTTGACCAGAGTCCCtttttttGAACTAC 1663
|||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1370 TTTTGGTTTCCGCACCTCGATGTTACTGCTTGCTGACCAGAGTCCCTTTTTTTGAACTAC 1429
Query 1664 ACTTTGAGATGTTAAACAGTATGATTGCACAAGAGCGTCTAAAACGAATAACCGAATTTG 1723
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1430 ACTTTGAGATGTTAAACAGTATGATTGCACAGGAGCGTCTAAAACGCATAACCGAATTTG 1489
Query 1724 TTAGTGAGATGTCTCTTGCTGCTGCATGCTATCTTCCATCAATATCCAGGAGGAATGATC 1783
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1490 TTAGTGAGATGTCTCTTGCTGCTGCATGCTATCGTCCATCAATATCCAGGACGAATGATC 1549
Query 1784 AAATTGATAGCCGTGTTTCATCACCTCGTAGCAACCCTGATGATTGGATGGCTTCTGCAA 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AAATTGATAGCCGTGTTTCATCACCTCGTAGCAACCCTGATGATTGGATGGCTTCTGCAA 1609
Query 1844 TACCTGTTGATGGAGTCATGGCACTCACTGCCGCAGCTGCAGGACTGATAACGGATAGTG 1903
||||||||||||||||||||||||| || ||||||||||| ||| |||| || |||||||
Sbjct 1610 TACCTGTTGATGGAGTCATGGCACTTACAGCCGCAGCTGCGGGATTGATCACTGATAGTG 1669
Query 1904 ACATTGCGAATTTTGCAGAACCTCAATCTCCAGATAGTGTTGTCACCAGTGATACTTCAG 1963
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1670 ACATTGCGAATTTTGCAGAACCTCAATCTCCAGATAGTGTTGTCACCAGCGATACTTCAG 1729
Query 1964 ATGTTAGCCAGATCAAGGAAATAGAAAGAGACGGAAGAAAAGTTTTCCATTGTTACGATG 2023
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1730 ATGTAAGCCAGATCAAGGAAATAGAAAGAGACGGGAGAAAAGTTTTCCATTGTTACGATG 1789
Query 2024 AAAATTCTCCTGAAGTATTTGAGAACCACTTGGATACCCCCGAAAGAACGTCCCAGAGCT 2083
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1790 AAAATTCTCCTGAAGTATTTGAGAACCACTTGGATACCCCCGAAAGAACGTCCCAGTGCT 1849
Query 2084 ATGACAATGGCCACACTTCTCCAGAGGTTACATGTTCTGATCCTAGGACCCAACCGATAG 2143
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1850 ATGACAATGGCCACACTTCTCCAGAGGTTACATATGCTGATCCTAGGACCCAACCGATAG 1909
Query 2144 AGCGTAATGAAAGCTGTGAGTCTGTGTTCAGTTCAGCTAGAAGTGTGTTGTCAGATGATG 2203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1910 AGCGTAATGAAAGCTGTGAGTCTGTGTTCAGTTCAGCTAGAAGTGTGTTGTCAGATGA-G 1968
Query 2204 -TTGATGAATTATCGAATAGCGAAAATGATTTTGGAGATGATTTAATACTGGAATGGGCT 2262
||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1969 ATTGATGATTTATCAAATAGTGAAAATGATTTCGGAGATGATTTAATACTGGAATGGGCT 2028
Query 2263 AAAGACCACAACAATGATTCCTTACAATTAGTTTGCGGCTACCATTCATTGGCAATTCCT 2322
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2029 AAGGACCACAACAATGATTCGTTACAATTAGTTTGCGGCTACCATTCATTGGCAATTCCT 2088
Query 2323 TCCCGTGGAAGTGAAGTAGTTTTCCACCCCCTGGAACATTTACAATCAATCTCGTATACC 2382
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2089 CCCCGTGGAAGTGAAGTTGTTTTCCACCCCCTGGAACATTTACAATCAATCGCGTATACC 2148
Query 2383 CGTCCTCCAGTTTCAGCTCTAGGATTGTCAGAAGAATATATTTGCTCTTCTGATTCTAAA 2442
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2149 CGCCCTCCAGTTTCAGCTCTAGGATTGTCAGAAGAATATATTTGCTCTTCTGATTCTTCC 2208
Query 2443 GAGATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACG 2502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2209 GAGATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACG 2268
Query 2503 GCAACAGTTTGTCGTATTCTCTCACTTGAAAC 2534
||||||||||||||||||||||| ||||||||
Sbjct 2269 GCAACAGTTTGTCGTATTCTCTCTCTTGAAAC 2300
Score = 1358 bits (735), Expect = 0.0
Identities = 898/972 (92%), Gaps = 29/972 (3%)
Strand=Plus/Plus
Query 527 ATGAAGAATCTGCTTCAGGTTCACCAGAGAGGGATGACATTACTCTTAGTAAAGAGATTA 586
|||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 269 ATGAAGAATCTGGTTCAGGTTCACCCGAGAGGGATGACAATACTCTTAGTAGAGAGATTA 328
Query 587 AAGAACTGGATACACAAGTGGTAAATGGTC-ATCTGAAGGTAG-GTG-GAACCGAAGA-A 642
|||||||||||||||||||||||||||||| | || || | || || ||| || |
Sbjct 329 AAGAACTGGATACACAAGTGGTAAATGGTCAAGCT-AAAGCAGATTGTGAA---AATAGG 384
Query 643 GATACAGCAGCATGTGATAGATGTGAAAATAGGGAT-GAGAACAGAT-TGTTGGAA---- 696
||| || | || ||| | | || ||| | |||| | | | |||| | || |||
Sbjct 385 GAT-GAG-AACA---GATTG-T-TGGAAA-A-GGATGGTG-A-AGATAT-TTCGAATTTG 432
Query 697 AAGAACAGTG--A-AGATAATGAACTGCAGAGTCCAAGATGCGAGACACAAGTTAATAAT 753
| | || | | |||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 433 GTGCATAGGGAAACAGATGATGAACCGCAGAGTCCAAGATGCGAGACACAAGTTAATGAC 492
Query 754 ACAAGTATTAGAAAGATGGAAATGAGAGAAGTTATAGGAGAGCAAGACTCTTCGCCATGT 813
||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 493 ACATGTATCAGAAAGATGGAAATGAGAGAAGTTACAGGAGAGCAAGACTCTTCGCCATGT 552
Query 814 ACTGCGGATGCAGTTAAAGTAGCTGGAGAGACATATCAAAACGTATACTTCAATGGACCA 873
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ACTGCAGATGCAGTTAAAGCAGCTGGAGAGACATATCAAAACGTATACTTCAATGGACCA 612
Query 874 GTCTTACCGCAGTCACCTACACAAGGACATAGGCGCACCCAAAGTGAGATAGGGACTCCT 933
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTCTTACCGCAGTCACCGACACAAGGACATAGGCGCACCCAAAGTGAGATAGGGACTCCT 672
Query 934 GGACACAGACGCACAAACAGTTTCCAGAGATTGAAAACACAGATGCAAAAGGCTTGGCGT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GGACACAGACGCACAAACAGTTTCCAGAGATTGAAAACACAGATGCAAAAGGCTTGGCGT 732
Query 994 GGTGTCAGCAATCTGCGTGAGGATAACCGGCCCACTTTCAATCCTGAGGTCTTAGCAAAC 1053
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GGGGTCAGCAATCTGCGTGAGGATAACCGGCCCACTTTCAATCCTGAGGTCTTAGCAAAC 792
Query 1054 CAAAAAAGACAGTGGTACCAGCTCCACTCTTCAAAAGCTCTGGATCAAACAAAATTGAAG 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 793 CAAAAAAGACAGTGGTACCAGCTCCACTCTTCAAAAGCTCTGGATCAAACAAAATTAAAG 852
Query 1114 GAGCCAGCGTCACTGTTTGAACATTTTATCATCGTGGGGCTTCATCCGGAAACGAATTTG 1173
|||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 853 GAGCCAACATCACTATTTGAACATTTTATCATTGTGGGGCTTCATCCGGAAACGAATTTG 912
Query 1174 AGGCCAGTGGAAGAGGCTTTCCGTAGAAGAAAGAAATGGGAGATGGAGATGTCAAGGTAT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AGGCCAGTGGAAGAGGCTTTCCGTAGAAGAAAGAAATGGGAGATGGAGATGTCAAGGTAT 972
Query 1234 GAAGTGGCAGATTACAGAATACTCCGTCACCGTGGGCCTCAATTTCCTATATTGGAGCCA 1293
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 973 GAAGTGGCAGACTACAGAATACTCCGTCACCGTGGGCCTCAATTTCCAATATTAGAGCCA 1032
Query 1294 CAGATTCTTTTTAAATACCCTCCCGGAAAGAAGGTAGCAATGCGTCCAAAGGATCTAGCA 1353
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1033 CAGATTCTTTTTAAATACCCTCCTGGAAAGAAGGTGGCAATGCGTCCAAAGGATCTAGCA 1092
Query 1354 ACTTTCTGCTTTCCTGGTGGTGTCAAGGCACGACTTTTGGAGAGGACCCCATCTCTCAGT 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 ACTTTCTGCTTTCCTGGTGGTGTCAAGGCACGACTTTTGGAGAGGACCCCATCTCTCAGT 1152
Query 1414 GATCTAAATGAGCTTGTGTATGGACAGGAACATTTAGGCACTGATGATTCGTCATTCATA 1473
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1153 GATCTAAATGAGCTTGTGTATGGACAGGAACATTTAGGCACAGATGATTCATCGTTCATA 1212
Query 1474 TTTTCGTTCAAG 1485
||||||||||||
Sbjct 1213 TTTTCGTTCAAG 1224
Score = 510 bits (276), Expect = 2e-143
Identities = 296/306 (97%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 2806 AAAATATGTAACATGCCAGCATTGCCTCAGTGTAGAGAACTTATGGCTCAGTTGGCTCCA 2865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 AAAATATGTAACATGCCAGCATTGCCTCAGTGTAGAGAACTTATGGCTCAGTTGGCTCCA 2490
Query 2866 ATCCATGCAACATTGGCTCATCAGAGCTCGAACGCTAGAAGACACCCGGTTTATAAATGC 2925
||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2491 ATCCACGCCACACTGGCTCATCAGAGCTCGACCGCTAGAAGACACCCGGTTTATAAATGC 2550
Query 2926 AATGAAGTGCAAGCAGAAGCCGCGACTAAGTTCTTGAGAGTAATGAGAGATTACATGGAG 2985
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2551 AATGAAGTGCAAGCAGAAGGCGCGACTAAATTCTTGAGAGTAATGAGAGATTACATGGAG 2610
Query 2986 TCTCTTTGCTCAGATTTACACTCTCACACCATAACAAGTGTTCAATCCAATAGCGACAGG 3045
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2611 TCTCTTTGCTCAGATTTACACTCTCACACCATAACAAGTGTTCAATCTAATAGCGACAGG 2670
Query 3046 GTTTCTCTACTTCTAAAGGACAGTTTTATCGATTCATTTCCTGGTAGAGATCGACCCTTC 3105
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2671 GTTTCTCTACTTCTTAAGGACAGTTTTATCGATTCGTTTCCTGGTAGAGACCGACCCTTC 2730
Query 3106 ATTAAG 3111
||||||
Sbjct 2731 ATTAAG 2736
Score = 276 bits (149), Expect = 9e-73
Identities = 198/219 (90%), Gaps = 13/219 (6%)
Strand=Plus/Plus
Query 146 ATCGAGATGATATATT---AGGATACCC---GAAGAAGACCGATGTTGAAGATTTTAGGG 199
|||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct 53 ATCGAGATGATATATTAGGAGGATACCCGAAGAAGAAGACGGATGTTGAAGATTTTAGGG 112
Query 200 ATGGAGATGAAAATGGATGGACAACTTCGAGTAGGAGGAATACGTTGGACATGGTTAAGG 259
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 113 ATGGAGATGAAAATGGATGGACAACTTTGAGTAGGA--A-TACGTTGGACATGGTTAAGG 169
Query 260 AAGGTATGTTGTTGAATGCAGAGGA-GTTGACTACATCTTGCGAGGAGAAGGTATCGATA 318
|||||| ||||||||||| |||||| || || |||| |||||||||||||||||||||||
Sbjct 170 AAGGTAGGTTGTTGAATGGAGAGGAAGT-GAATACAGCTTGCGAGGAGAAGGTATCGATA 228
Query 319 AGTAGAGACGAATTCGG-TACCTTGAGGAGTGAAGCACA 356
|||||||||||| ||| ||||||||||||||||| |||
Sbjct 229 AGTAGAGACGAAG-CGGGTACCTTGAGGAGTGAAGGACA 266
Score = 220 bits (119), Expect = 4e-56
Identities = 125/128 (98%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 2599 GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAG 2658
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2302 GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTCCCAATGATTCGGCCATTTCAGTGGCAG 2361
Query 2659 AGTTTATTGCTTCCGGTTCTGCCTGGAAGGATGTTTGATTTCCTCGAGGCACCGGTTCCC 2718
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2362 AGTTTATTGCTTCCGGTTCTGCCTGGAAGGATGTTTGATTTCCTTGAGGCACCAGTTCCC 2421
Query 2719 TTCCTTGT 2726
||||||||
Sbjct 2422 TTCCTTGT 2429
Score = 126 bits (68), Expect = 1e-27
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 3110 AGTTATTTGTAGACACACAACTGTTTAGTGTTTTATCAGACTCGCGACTATCGAGCTTTG 3169
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2834 AGTTATTTGTAGACACACAACTGTTTAGTGTTTTATCAGACTCGAGATTATCGAGCTTTG 2893
Query 3170 AGAACGGGAGTCTCTGA 3186
|||||||| ||||||||
Sbjct 2894 AGAACGGGCGTCTCTGA 2910
Score = 63.9 bits (34), Expect = 8e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 116 CGGATATGCAGGGAGACGTTTTGGCTGTTCATCG 149
||||||||||||||||||||||||||||||||||
Sbjct 8 CGGATATGCAGGGAGACGTTTTGGCTGTTCATCG 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132402296467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5