BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20330.1
Length=2244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931896 jgi|Araly1|931896|scaffold_304353.1 2950 0.0
> Ahg931896 jgi|Araly1|931896|scaffold_304353.1
Length=2003
Score = 2950 bits (1597), Expect = 0.0
Identities = 1872/2005 (93%), Gaps = 18/2005 (1%)
Strand=Plus/Plus
Query 77 CTGAGAAGGAAGAGA-AAGCAATGGAGGACGAATTGGAAGGTCTACGAGCTCATTTTCCT 135
||||||| ||||||| |||| ||||| | |||||||||||||| |||||||||||||||
Sbjct 1 CTGAGAA-GAAGAGATAAGCTATGGATAAAGAATTGGAAGGTCTTCGAGCTCATTTTCCT 59
Query 136 GTTTCGTTCGGTAAGACATCGAAGGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 195
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 GTTTCGTTCGGTAAGACATCGAAAGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 119
Query 196 CGCCGCACCGATGTAGCCAACGACGCCGGAGTTTCGTCGGATATCACCACGAAGAAACCT 255
||||||||||||||||||| ||||||||| |||||||||||| || |||| ||||||| |
Sbjct 120 CGCCGCACCGATGTAGCCACCGACGCCGGGGTTTCGTCGGATTTCTCCACCAAGAAACTT 179
Query 256 GATTCC-G---A--TAAATCTGGATTCCCGTCTCTATCTTCCTCATCTCAAACCTGGCTC 309
|| ||| | | | ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 180 GACTCCGGTAAATCTGAATCTGGATTCCCGTCTCTGTCTTCCTCATCTGAAACCTGGCTC 239
Query 310 CGAAGTGTTCGCGGTCCGAATCGTAACCCTAACAGCTCC-G-GT-GAT-GTAGCAATG-- 363
|||||||||||||||||||| ||||||||||| |||||| | | | | | | |||
Sbjct 240 CGAAGTGTTCGCGGTCCGAAACGTAACCCTAATAGCTCCAGTCTAGCTCATTCCGATGAT 299
Query 364 GGT-CCGCCA-CCG-CCACCGTCATCTAAACGGACGCAAGAGGAAGAGGAGGAGGATGAA 420
| | || | | || ||| | ||||||| ||||||||||||||| |||||||||||
Sbjct 300 GATATAGCAATGGGTCCGCCGCCGTCTAAACCGACGCAAGAGGAAGAAGAGGAGGATGAC 359
Query 421 GAAGTTATGATGGGACCACCGCCACCGCCTAAGGGACTCGGGAACATTAATGATTCTGAT 480
| |||||||||||||||||| || || || |||||||| ||||| | |||||||||||||
Sbjct 360 GGAGTTATGATGGGACCACCTCCGCCACCGAAGGGACTTGGGAATAGTAATGATTCTGAT 419
Query 481 GATGAGGGGGATATGATCGGTCCTCCGCCGCCGCCTCCTGCTGCTCGAGATTCAGATGAA 540
||||| | ||| |||||||||||||| |||||||||| |||||| |||||| ||||||
Sbjct 420 GATGATGAGGACATGATCGGTCCTCCTCCGCCGCCTCGGGCTGCTATAGATTCCGATGAA 479
Query 541 GATTCAGATGACGATGATGATAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATTCAGATGACGATGATGCTAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 539
Query 601 AACGAGATTCAGCTTAAGGGACATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 660
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACGAGATTCAACTCAAGGGCCATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 599
Query 661 GGAGCTAGAGTTCTTTCAGGAAGCTATGACTACACTGTGAGAATGTACGATTTCCAAGGG 720
||||||||||||||||| ||||||||||||||||||||| | ||||| ||||| ||||||
Sbjct 600 GGAGCTAGAGTTCTTTCTGGAAGCTATGACTACACTGTGCGTATGTATGATTTTCAAGGG 659
Query 721 ATGAATTCGAGACTACAGTCTTTTAGACAGATAGAGCCATCTGAGGGACACCAAGTTCGC 780
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 660 ATGAATTCAAGACTTCAGTCTTTTAGACAGATCGAACCATCTGAGGGACACCAAGTTCGC 719
Query 781 AGCGTGAGCTGGAGTCCCACTTCTGGTCAATTTCTATGCGTTACTGGCTCTGCACAAGCT 840
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 AGCTTGAGCTGGAGTCCCACTTCTGGTCATTTTCTATGCGTTACTGGCTCTGCACAAGCT 779
Query 841 AAGATTTTTGATCGAGATGGTCTTACTCTTGGTGAGTTTATGAAAGGAGATATGTATATT 900
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 780 AAGATTTTTGATCGAGATGGGCTTACTCTTGGTGAGTTTATGAAAGGGGATATGTATATT 839
Query 901 CGTGATCTGAAGAACACTAAGGGACATATTTGTGGGTTGACCTGTGGAGAATGGCATCCG 960
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 840 CGGGATCTGAAGAACACTAAGGGCCATATTTGTGGGTTGACTTGTGGAGAATGGCATCCG 899
Query 961 AGGACTAAGGAAACCGTTCTGACTTCGTCGGAAGACGGGTCTTTGCGTATATGGGATGTT 1020
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 900 AGGACTAAGGAAACGGTTCTGACTTCTTCGGAAGACGGGTCTTTGCGTATTTGGGATGTT 959
Query 1021 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCTAAGCTTGCTAGACCAGGGAGGGTT 1080
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCGAAGCTTGCTAGACCAGGGAGGGTT 1019
Query 1081 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCCGGTGGTGTAGGAGAT 1140
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1020 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCTGGTGGCGTAGGAGAT 1079
Query 1141 GGATCTATACAGATTTGGAGTCTCAAGCCGGGATGGGGAAGCCGACCAGATATATACGTT 1200
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 GGTTCTATACAGATTTGGAGTCTCAAGCCGGGGTGGGGAAGCCGACCAGATATATACGTT 1139
Query 1201 GGGAAGGCCCACACTGATGATATAACCTCTGTAAAGTTCTCTAGCGATGGCAGAATTCTG 1260
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 GGGAAGGCCCACACCGATGATATAACCTCTGTAAAGTTTTCTAGCGATGGCAGAATTCTG 1199
Query 1261 TTGTCAAGGAGTTTTGATGGTTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1320
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTGTCGAGGAGTTTTGATGGCTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1259
Query 1321 CTAAAAGTTTTCGAGGGTCTACCTAATTATTATCCTCAAACCAACGTTGCCTTTAGTCCA 1380
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1260 CTAAAAGTTTTCGAGGGTCTCCCTAATTATTATCCACAAACCAACGTTGCCTTTAGTCCA 1319
Query 1381 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1379
Query 1441 CTATGTTTCTACGATCGCACCAAACTAGAGATAGTTCAAAAAGTCGGAATCTCTCCAACT 1500
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1380 CTATGCTTCTACGATCGCACCAAACTAGAGATTGTTCAAAAAGTCGGAATCTCTCCAACT 1439
Query 1501 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCCGGA 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCTGGA 1499
Query 1561 GACAAAAGCCAAGGAGGGACTCACATTCTTTACGACCCAAGTCAGAGCGAGAGAGGCGCA 1620
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1500 GACAAAAGCCAAGGAGAGACTCACATTCTTTACGACCCAACTCAGAGCGAGAGAGGAGCA 1559
Query 1621 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1619
Query 1681 GTAATACACAATCCTCATGCATTACCATTGTTCAGAGACGCACCAAGCCGTAAACGAGAA 1740
|| |||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||
Sbjct 1620 GTCATACACAATCCTCATGCACTACCGTTGTTCAGAGACGCACCAAGCCGTAAAAGACAA 1679
Query 1741 AGAGAGAAAGCATTGAAGGATCCAATGAAATCCCACAAGCCTGAGATACCCATGACAGGT 1800
||||||||||||||||||||||| || ||| |||||||||||||||| |||||||| |||
Sbjct 1680 AGAGAGAAAGCATTGAAGGATCCTATTAAAGCCCACAAGCCTGAGATTCCCATGACTGGT 1739
Query 1801 CCTGGTCATGGTGGAAGAGTTGGGACTACTGGTAGTGGCTTATTAACACAATATCTTCTC 1860
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1740 CCTGGTCATGGTGGAAGAGTTGGGACCACTGGTAGTAGCTTATTAACACAATATCTTCTC 1799
Query 1861 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAAGAAGATCCAAGAGAAGCAATATTG 1920
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1800 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAGGAAGATCCAAGAGAAGCGATATTG 1859
Query 1921 AAATACGCAGAGGTTGCTGTTAAAGATCCAAAGTTTATTGCACCTGCTTACTCTCAGACC 1980
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1860 AAATACGCAGAGGTTGCTGTTAAAGATCCTAAGTTTATTGCACCCGCTTACTCTCAGACC 1919
Query 1981 CAGCCTAAGACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACTAAAAAA 2040
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1920 CAGCCTGACACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACCAAAAAA 1979
Query 2041 TAATTAGAGTTTTTCAAATTCAACG 2065
||||||| || | |||||||||||
Sbjct 1980 TAATTAGTCTTGT-CAAATTCAACG 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84484163410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5