BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20330.1 Length=2244 Score E Sequences producing significant alignments: (Bits) Value Ahg931896 jgi|Araly1|931896|scaffold_304353.1 2950 0.0 > Ahg931896 jgi|Araly1|931896|scaffold_304353.1 Length=2003 Score = 2950 bits (1597), Expect = 0.0 Identities = 1872/2005 (93%), Gaps = 18/2005 (1%) Strand=Plus/Plus Query 77 CTGAGAAGGAAGAGA-AAGCAATGGAGGACGAATTGGAAGGTCTACGAGCTCATTTTCCT 135 ||||||| ||||||| |||| ||||| | |||||||||||||| ||||||||||||||| Sbjct 1 CTGAGAA-GAAGAGATAAGCTATGGATAAAGAATTGGAAGGTCTTCGAGCTCATTTTCCT 59 Query 136 GTTTCGTTCGGTAAGACATCGAAGGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 195 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 60 GTTTCGTTCGGTAAGACATCGAAAGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 119 Query 196 CGCCGCACCGATGTAGCCAACGACGCCGGAGTTTCGTCGGATATCACCACGAAGAAACCT 255 ||||||||||||||||||| ||||||||| |||||||||||| || |||| ||||||| | Sbjct 120 CGCCGCACCGATGTAGCCACCGACGCCGGGGTTTCGTCGGATTTCTCCACCAAGAAACTT 179 Query 256 GATTCC-G---A--TAAATCTGGATTCCCGTCTCTATCTTCCTCATCTCAAACCTGGCTC 309 || ||| | | | ||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 180 GACTCCGGTAAATCTGAATCTGGATTCCCGTCTCTGTCTTCCTCATCTGAAACCTGGCTC 239 Query 310 CGAAGTGTTCGCGGTCCGAATCGTAACCCTAACAGCTCC-G-GT-GAT-GTAGCAATG-- 363 |||||||||||||||||||| ||||||||||| |||||| | | | | | | ||| Sbjct 240 CGAAGTGTTCGCGGTCCGAAACGTAACCCTAATAGCTCCAGTCTAGCTCATTCCGATGAT 299 Query 364 GGT-CCGCCA-CCG-CCACCGTCATCTAAACGGACGCAAGAGGAAGAGGAGGAGGATGAA 420 | | || | | || ||| | ||||||| ||||||||||||||| ||||||||||| Sbjct 300 GATATAGCAATGGGTCCGCCGCCGTCTAAACCGACGCAAGAGGAAGAAGAGGAGGATGAC 359 Query 421 GAAGTTATGATGGGACCACCGCCACCGCCTAAGGGACTCGGGAACATTAATGATTCTGAT 480 | |||||||||||||||||| || || || |||||||| ||||| | ||||||||||||| Sbjct 360 GGAGTTATGATGGGACCACCTCCGCCACCGAAGGGACTTGGGAATAGTAATGATTCTGAT 419 Query 481 GATGAGGGGGATATGATCGGTCCTCCGCCGCCGCCTCCTGCTGCTCGAGATTCAGATGAA 540 ||||| | ||| |||||||||||||| |||||||||| |||||| |||||| |||||| Sbjct 420 GATGATGAGGACATGATCGGTCCTCCTCCGCCGCCTCGGGCTGCTATAGATTCCGATGAA 479 Query 541 GATTCAGATGACGATGATGATAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 600 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 480 GATTCAGATGACGATGATGCTAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 539 Query 601 AACGAGATTCAGCTTAAGGGACATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 660 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 540 AACGAGATTCAACTCAAGGGCCATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 599 Query 661 GGAGCTAGAGTTCTTTCAGGAAGCTATGACTACACTGTGAGAATGTACGATTTCCAAGGG 720 ||||||||||||||||| ||||||||||||||||||||| | ||||| ||||| |||||| Sbjct 600 GGAGCTAGAGTTCTTTCTGGAAGCTATGACTACACTGTGCGTATGTATGATTTTCAAGGG 659 Query 721 ATGAATTCGAGACTACAGTCTTTTAGACAGATAGAGCCATCTGAGGGACACCAAGTTCGC 780 |||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 660 ATGAATTCAAGACTTCAGTCTTTTAGACAGATCGAACCATCTGAGGGACACCAAGTTCGC 719 Query 781 AGCGTGAGCTGGAGTCCCACTTCTGGTCAATTTCTATGCGTTACTGGCTCTGCACAAGCT 840 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 720 AGCTTGAGCTGGAGTCCCACTTCTGGTCATTTTCTATGCGTTACTGGCTCTGCACAAGCT 779 Query 841 AAGATTTTTGATCGAGATGGTCTTACTCTTGGTGAGTTTATGAAAGGAGATATGTATATT 900 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 780 AAGATTTTTGATCGAGATGGGCTTACTCTTGGTGAGTTTATGAAAGGGGATATGTATATT 839 Query 901 CGTGATCTGAAGAACACTAAGGGACATATTTGTGGGTTGACCTGTGGAGAATGGCATCCG 960 || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 840 CGGGATCTGAAGAACACTAAGGGCCATATTTGTGGGTTGACTTGTGGAGAATGGCATCCG 899 Query 961 AGGACTAAGGAAACCGTTCTGACTTCGTCGGAAGACGGGTCTTTGCGTATATGGGATGTT 1020 |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 900 AGGACTAAGGAAACGGTTCTGACTTCTTCGGAAGACGGGTCTTTGCGTATTTGGGATGTT 959 Query 1021 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCTAAGCTTGCTAGACCAGGGAGGGTT 1080 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 960 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCGAAGCTTGCTAGACCAGGGAGGGTT 1019 Query 1081 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCCGGTGGTGTAGGAGAT 1140 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1020 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCTGGTGGCGTAGGAGAT 1079 Query 1141 GGATCTATACAGATTTGGAGTCTCAAGCCGGGATGGGGAAGCCGACCAGATATATACGTT 1200 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1080 GGTTCTATACAGATTTGGAGTCTCAAGCCGGGGTGGGGAAGCCGACCAGATATATACGTT 1139 Query 1201 GGGAAGGCCCACACTGATGATATAACCTCTGTAAAGTTCTCTAGCGATGGCAGAATTCTG 1260 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1140 GGGAAGGCCCACACCGATGATATAACCTCTGTAAAGTTTTCTAGCGATGGCAGAATTCTG 1199 Query 1261 TTGTCAAGGAGTTTTGATGGTTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1320 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TTGTCGAGGAGTTTTGATGGCTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1259 Query 1321 CTAAAAGTTTTCGAGGGTCTACCTAATTATTATCCTCAAACCAACGTTGCCTTTAGTCCA 1380 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1260 CTAAAAGTTTTCGAGGGTCTCCCTAATTATTATCCACAAACCAACGTTGCCTTTAGTCCA 1319 Query 1381 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1379 Query 1441 CTATGTTTCTACGATCGCACCAAACTAGAGATAGTTCAAAAAGTCGGAATCTCTCCAACT 1500 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1380 CTATGCTTCTACGATCGCACCAAACTAGAGATTGTTCAAAAAGTCGGAATCTCTCCAACT 1439 Query 1501 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCCGGA 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1440 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCTGGA 1499 Query 1561 GACAAAAGCCAAGGAGGGACTCACATTCTTTACGACCCAAGTCAGAGCGAGAGAGGCGCA 1620 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1500 GACAAAAGCCAAGGAGAGACTCACATTCTTTACGACCCAACTCAGAGCGAGAGAGGAGCA 1559 Query 1621 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1619 Query 1681 GTAATACACAATCCTCATGCATTACCATTGTTCAGAGACGCACCAAGCCGTAAACGAGAA 1740 || |||||||||||||||||| |||| ||||||||||||||||||||||||||| || || Sbjct 1620 GTCATACACAATCCTCATGCACTACCGTTGTTCAGAGACGCACCAAGCCGTAAAAGACAA 1679 Query 1741 AGAGAGAAAGCATTGAAGGATCCAATGAAATCCCACAAGCCTGAGATACCCATGACAGGT 1800 ||||||||||||||||||||||| || ||| |||||||||||||||| |||||||| ||| Sbjct 1680 AGAGAGAAAGCATTGAAGGATCCTATTAAAGCCCACAAGCCTGAGATTCCCATGACTGGT 1739 Query 1801 CCTGGTCATGGTGGAAGAGTTGGGACTACTGGTAGTGGCTTATTAACACAATATCTTCTC 1860 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 1740 CCTGGTCATGGTGGAAGAGTTGGGACCACTGGTAGTAGCTTATTAACACAATATCTTCTC 1799 Query 1861 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAAGAAGATCCAAGAGAAGCAATATTG 1920 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1800 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAGGAAGATCCAAGAGAAGCGATATTG 1859 Query 1921 AAATACGCAGAGGTTGCTGTTAAAGATCCAAAGTTTATTGCACCTGCTTACTCTCAGACC 1980 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1860 AAATACGCAGAGGTTGCTGTTAAAGATCCTAAGTTTATTGCACCCGCTTACTCTCAGACC 1919 Query 1981 CAGCCTAAGACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACTAAAAAA 2040 |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1920 CAGCCTGACACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACCAAAAAA 1979 Query 2041 TAATTAGAGTTTTTCAAATTCAACG 2065 ||||||| || | ||||||||||| Sbjct 1980 TAATTAGTCTTGT-CAAATTCAACG 2003 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84484163410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5