BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20340.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931897 jgi|Araly1|931897|scaffold_304354.1 2414 0.0
> Ahg931897 jgi|Araly1|931897|scaffold_304354.1
Length=1480
Score = 2414 bits (1307), Expect = 0.0
Identities = 1418/1472 (96%), Gaps = 6/1472 (0%)
Strand=Plus/Plus
Query 85 GGGAAGGTGTTGAAGCCGATGGACTCAGAGCAATTGAGAGAGTACGGACATCTG-ATGGT 143
||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 3 GGGAAGGTGTTGAAGCCGATGGACTCAGAGCAATTGAGAGAATACGGACATC-GAATGGT 61
Query 144 TGATTTCATTGCTGATTACTACAAAACCATCGAAGATTTCCCTGTTCTTAGCCAAGTTCA 203
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TGATTTCATTGCCGATTATTACAAAACCATCGAAGATTTCCCTGTTCTTAGCCAAGTTCA 121
Query 204 GCCTGGTTATCTTCATAAGCTTTTGCCTGATTCTGCACCTGACCACCCTGAAACTCTGGA 263
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 122 GCCTGGTTATCTTCATAAGCTTTTGCCTGATTCTGCACCAGACCACCCTGAAACTCTGGA 181
Query 264 CCAAGTTCTTGATGATGTTCGAGCAAAGATATTGCCTGGAGTAACGCATTGGCAAAGCCC 323
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 182 CCAAGTTCTTGATGATGTTCGGGCGAAGATATTGCCTGGAGTAACGCATTGGCAAAGCCC 241
Query 324 GAGTTTCTTTGCTTATTATCCTTCTAACAGCAGTGTTGCTGGGTTCTTGGGTGAGATGTT 383
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 242 GAGTTTCTTTGCTTATTATCCTTCTAACAGCAGTGTTGCTGGCTTCTTGGGTGAGATGTT 301
Query 384 GAGTGCTGGTCTTGGCATTGTTGGTTTTAGTTGGGTTACTTCTCCAGCTGCCACAGAGCT 443
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 302 GAGTGCTGGTCTTGGTATTGTTGGTTTTAGTTGGGTTACTTCTCCAGCTGCTACCGAGCT 361
Query 444 AGAAATGATCGTTCTTGATTGGGTTGCTAAACTTCTCAACCTACCCGAGCAGTTTATGTC 503
||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 362 AGAAATGATTGTTCTTGATTGGCTTGCCAAACTGCTCAACCTACCCGAGCAGTTTATGTC 421
Query 504 CAAAGGAAATGGAGGTGGAGTTATACAAGGGTCAGCTAGTGAAGCTGTTCTTGTTGTTCT 563
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 422 CAAAGGAAATGGAGGTGGAGTTATACAAGGTTCAGCTAGTGAAGCTGTTCTTGTTGTTCT 481
Query 564 GATTGCTGCACGCGACAAGGTTTTAAGAAGCGTTGGCAAAAACGCGCTTGAGAAGCTCGT 623
||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 482 GATTGCTGCCCGCGACAAGGTTTTAAGAAGCGTTGGCAAAAACTCACTTCAGAAGCTCGT 541
Query 624 TGTCTACTCCTCTGACCAGACTCATTCAGCTTTACAGAAGGCTTGCCAGATTGCTGGAAT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGTCTACTCCTCTGACCAGACTCATTCAGCTTTACAGAAGGCTTGCCAGATTGCTGGAAT 601
Query 684 CCATCCAGAGAATTGCAGGGTGCTGACAACAGACTCTTCTACAAATTACGCTCTGCGTCC 743
|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||
Sbjct 602 CCATCCAGAGAATTGCAGGGTGCTGAAAACCGATTCTTCTACAAATTATGCTCTGCGTCC 661
Query 744 AGAATCGCTTCAAGAAGCTGTTTCT-AGGGATCTTGAAGCTGGATTGATTCCATTCTTCT 802
||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 662 AGAATTGCTTCAAGAAGCTGTTTCTCA-GGATCTTGAAGCTGGATTGATTCCTTTCTTCT 720
Query 803 TATGTGCTAATGTTGGGACCACTTCTTCAACCGCAGTTGATCCATTAGCTGCACTGGGGA 862
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 TATGTGCTAATGTTGGAACCACTTCTTCAACCGCAGTTGATCCATTAGCTGCACTGGGAA 780
Query 863 AGATTGCTAATAGCAATGGA-ATTTGGTTTCACGTGGATGCAGCATATGCTGGAAGTGCC 921
|||| ||||| |||||| || || |||||||||||||||||||| || |||||||||||
Sbjct 781 AGATAGCTAACAGCAAT-GAGATGTGGTTTCACGTGGATGCAGCGTACGCTGGAAGTGCT 839
Query 922 TGTATATGTCCAGAGTATCGGCAATACATTGACGGTGTAGAAACTGCAGACTCTTTTAAC 981
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTATATGTCCAGAGTATCGACAATACATTGACGGTGTAGAAACTGCAGACTCTTTTAAC 899
Query 982 ATGAATGCTCACAAATGGTTCCTCACTAACTTCGATTGTTCCCTTCTTTGGGTAAAGGAT 1041
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 900 ATGAATGCTCACAAATGGTTCCTCACTAATTTCGATTGTTCCCTTCTTTGGGTTAAGGAT 959
Query 1042 CAAGATTCTCTTACATTAGCTCTTTCAACAAATCCAGAGTTTCTCAAAAACAAGGCCTCT 1101
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAAGATTCTCTTAAATTAGCTCTTTCAACAAATCCAGAGTTTCTCAAAAACAAGGCCTCT 1019
Query 1102 CAGGCAAACTTGGTTGTTGATTACAAAGATTGGCAAATCCCTCTCGGACGAAGATTCAGA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAGGCAAACTTGGTTGTTGATTACAAAGATTGGCAAATCCCTCTCGGACGAAGATTCAGA 1079
Query 1162 TCATTGAAACTATGGATGGTTTTAAGGCTCTATGGATCTGAGACCTTGAAGAGCTATATA 1221
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCATTGAAACTATGGATGGTTTTGAGGCTCTATGGATCTGAGACCTTGAAGAGCTATATA 1139
Query 1222 AGAAACCATATCAAACTGGCTAAAGAATTCGAACAACTTGTCTCTCAAGATCCTAACTTC 1281
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1140 AGAAACCATATCAAACTGGCTAAAGAATTCGAACAGCTTGTCTCTCAAGATCCTAACTTC 1199
Query 1282 GAGATTGTCACACCTCGGATCTTTGCTCTTGTCTGTTTCCGCCTCGTGCCTGTGAAAGAC 1341
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1200 GAGATTGTCACACCTCGGATCTTTTCTCTTGTCTGTTTCCGCCTCGTGCCTGTGAAAAAC 1259
Query 1342 GAAGAAAAGAAGTGTAATAACCGAAACCGTGAACTCCTAGACGCAGTGAACTCTTCAGGG 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAAGAAAAGAAGTGTAATAACCGAAACCGTGAACTCCTAGACGCAGTGAACTCTTCAGGG 1319
Query 1402 AAACTCTTCATGTCGCACACTGCTTTATCGGGGAAAATCGTACTACGTTGCGCAATAGGA 1461
||||||||||| || ||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 1320 AAACTCTTCATTTCTCACACTGCTTTGTCGGGGAAAATCGTAATGCGTTGCGCAATAGGA 1379
Query 1462 GCGCCATTGACGGAGGAGAAGCACGTTAAGGAGGCGTGGAAGATTATTCAGGAAGAAGCA 1521
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1380 GCGCCATTGACGGAGGAGAAGCACGTGAAGGAGGCGTGGAAGGTTATTCAGGAAGAAGCA 1439
Query 1522 TCTTACTTGCTTCACAAGTAAATATGATAAAA 1553
||||||||||||||||||||||||||||||||
Sbjct 1440 TCTTACTTGCTTCACAAGTAAATATGATAAAA 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5