BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20350.1
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480862 jgi|Araly1|480862|fgenesh2_kg.3__3563__AT2G20350.1 632 0.0
Ahg332870 jgi|Araly1|332870|fgenesh1_pm.C_scaffold_8002213 204 6e-52
Ahg315617 jgi|Araly1|315617|fgenesh1_pm.C_scaffold_2000650 198 3e-50
> Ahg480862 jgi|Araly1|480862|fgenesh2_kg.3__3563__AT2G20350.1
Length=501
Score = 632 bits (342), Expect = 0.0
Identities = 441/485 (91%), Gaps = 21/485 (4%)
Strand=Plus/Plus
Query 1 ATGGAAAATTCAGAAAATGTTCCCTCTTACGATCAAAACATCAATTTCACTCCTAATTTG 60
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 1 ATGGAAAATTCAGAAAATGTTCCCTCTTACGATCAAAACAACAACTTCACTCCTTATTTG 60
Query 61 ACGAGAGATCAAGAACATGTGATCATGGTCTCTGCTTTGCAACAAGTAATATCCAACGTC 120
|||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||
Sbjct 61 ACGAGAGATCAAGAACATGTGATCATGGTCACTGCTTTGCGACAAGTGATATCCAACTTC 120
Query 121 GG-AG-G--------TG-----A-CA-CGAA--C--TCGAATGCATGGGAAGCTGATCTT 159
|| || | || | || | || | |||||||||||||||||| |||||
Sbjct 121 GGAAGTGACACTCCATGTCTCCATCACCCAACTCGATCGAATGCATGGGAAGCTCATCTT 180
Query 160 CCACCTTTGAACGCTGGCCCTTGTCCTCTTTGTAGTGTCACCGGCTGCTACGGTTGCGTC 219
||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CCACCTTTGAATGCTGGTCCTTGTCCTCTTTGTAGTATCACCGGCTGCTACGGTTGCGTC 240
Query 220 TTCCCACGACACGAGGCGATAATTAAGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAA 279
|||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TTCCCACGACACGAAGAGATAATTAGGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAG 300
Query 280 CCATCAGGTAAATGGGCGGCGGAGATATGGGATCCGAGTTTGAAAGTAAGGAGATGGCTT 339
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCATCAGGTAAATGGTCGGCGGAGATATGGGATCCGAGTTTGAAAGTAAGGAGATGGCTT 360
Query 340 GGAACGTTTCCAACAGCGGAGATGGCGGCTAAGGCTTACAACGATGCGGCGGCTGAGTTT 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GGAACGTTTCCAACAGCGGAGATGGCGGCTAAGGCTTACAACGATGCGGCGGCTGAACTT 420
Query 400 GTCGGAAGAAGATCAGCAAGACGTGGCACAAAGAACGGAGAGGAAGCATCTACCAAGAAG 459
|||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GTCGTAAGAAGACCAGCTAGACGTGGCACAAAGAACGGAGAGGAAGCATCAACCAAGAAG 480
Query 460 ACGAC 464
|||||
Sbjct 481 ACGAC 485
> Ahg332870 jgi|Araly1|332870|fgenesh1_pm.C_scaffold_8002213
Length=492
Score = 204 bits (110), Expect = 6e-52
Identities = 172/200 (86%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 245 AGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAACCATCAGGTAAATGGGCGGCGGAGA 304
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 269 AGAAGGAGAAGAAATACAAAGGAGTGAGGAAAAAGCCATCGGGTAAATGGGCGGCGGAGA 328
Query 305 TATGGGATCCGAGTTTGAAAGT-AAGGA-GATGGCTTGGAACGTTTCCAACAGCGGAGAT 362
||||||||||||||| |||| | ||||| | |||||||||||||||| ||| || ||||
Sbjct 329 TATGGGATCCGAGTTCGAAA-TCAAGGAAG-TGGCTTGGAACGTTTCTAACGGCAGAGAC 386
Query 363 GGCGGCTAAGG-CTTACAACGATGCGGCGGCTGAGTTTGTC-GGAAGAAGATCAGCAAGA 420
|||||| | | ||||| | || |||||| | ||| ||||| ||| ||| ||||||||||
Sbjct 387 GGCGGCGA-GTTCTTACGATGAGGCGGCG-CGGAGCTTGTCAGGA-GAACATCAGCAAGA 443
Query 421 CGTGGCACAAA-GAACGGAG 439
||||||| ||| ||||||||
Sbjct 444 CGTGGCA-AAACGAACGGAG 462
> Ahg315617 jgi|Araly1|315617|fgenesh1_pm.C_scaffold_2000650
Length=441
Score = 198 bits (107), Expect = 3e-50
Identities = 171/200 (86%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 245 AGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAACCATCAGGTAAATGGGCGGCGGAGA 304
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 218 AGAAGGAGAAGAAATACAAAGGAGTGAGGAAAAAGCCATCGGGTAAATGGGCGGCGGAGA 277
Query 305 TATGGGATCCGAGTTTGAAAGT-AAGGA-GATGGCTTGGAACGTTTCCAACAGCGGAGAT 362
||||||||||||||| |||| | ||||| | |||||||||||||||| ||| || ||||
Sbjct 278 TATGGGATCCGAGTTCGAAA-TCAAGGAAG-TGGCTTGGAACGTTTCTAACGGCAGAGAC 335
Query 363 GGCGGCTAAGG-CTTACAACGATGCGGCGGCTGAGTTTGTC-GGAAGAAGATCAGCAAGA 420
|||||| | | ||||| | || || ||| | ||| ||||| ||| ||| ||||||||||
Sbjct 336 GGCGGCGA-GTTCTTACGATGAGGCTGCG-CGGAGCTTGTCAGGA-GAACATCAGCAAGA 392
Query 421 CGTGGCACAAA-GAACGGAG 439
||||||| ||| ||||||||
Sbjct 393 CGTGGCA-AAACGAACGGAG 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17284481817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5