BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20360.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480863 jgi|Araly1|480863|fgenesh2_kg.3__3564__AT2G20360.1 2604 0.0
> Ahg480863 jgi|Araly1|480863|fgenesh2_kg.3__3564__AT2G20360.1
Length=1672
Score = 2604 bits (1410), Expect = 0.0
Identities = 1591/1676 (95%), Gaps = 21/1676 (1%)
Strand=Plus/Plus
Query 5 CCATttctctcctcttcttcctct-ttc-tctctctcACATCTGTATTTGTTG----T-C 57
||||||||||| ||||| || ||| | |||||||| ||||||||||||||| | |
Sbjct 1 CCATTTCTCTCTTCTTCATCTTCTCCCCTTCTCTCTCTCATCTGTATTTGTTGTCTCTCC 60
Query 58 -TCGATCGTGTAACTGAGAACGAAGGATGCAAGTAGTTTCCAGGAGATTAGTTCAACGGC 116
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 61 ATCGATCGTGTAACTGAGAACGAAAGATGCAAGCAGTTTCCAGGAGATTAGTTCAACGGC 120
Query 117 CTCTCGTCGGAGGAGCTTCGATCTATTCATCTTCTTCTCTCAGATCGCTCTACGGAGTCT 176
|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTCGCCGGAGAAGCTTCGATCTACTCATCTTCTTCTCTCAGATCGCTCTACGGAGTCT 180
Query 177 CTAATCACCTGAATGGGACTGATAATTGTCGCTATTCGTCTTCCCTCGCTACTAAGGGCG 236
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 181 CTAATCACCTGAATGGGACTGATAATCGTCGCTACTCGTCTTCCCTCGCTACTAAAGGCG 240
Query 237 TGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGTGGCATTGTAGCTA 296
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 241 TGGGACACCTCGCTCGCAAGGGTACTGGTGGAAGATCTTCCGTTAGTGGCATTGTAGCTA 300
Query 297 CAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCTTGTGCAGCAGCTAGCTAAAATGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCTTGTGCAGCAGCTAGCTAAAATGG 360
Query 357 GATCACAAGTGCTTGTTCCTTTCCGAGGCTCAGAGGACTCTCCTCGACATCTCAAGTTGA 416
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GATCACAAGTGCTCGTTCCTTTCCGAGGCTCAGAGGATTCTCCTCGACATCTCAAGTTGA 420
Query 417 TGGGAGATTTAGGACAGGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTA 476
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGGAGATTTAGGACAGGTAGTTCCAATGAAATTTGATCCAAGAGATGAAGACTCGATTA 480
Query 477 AGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGGAAGAGAGTACGAGACAA 536
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 481 AGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTTATTGGAAGAGAGTACGAGACCA 540
Query 537 GAAATTTCAGTTTTGAAGATGCGAATCATCATATTGCTGAGAAACTTGCATTGGTGGCCA 596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 GAAATTTCAGTTTTGAAGATGCGAATCATCATATCGCTGAGAAACTTGCATTGGTGGCCA 600
Query 597 AGGAACACGGTGGGATAATGAGATATATTCAAGTTTCTTGCCTAGGAGCTTCTGTGTCAT 656
||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 601 AGGAACACGGTGGGATAATGAGATACATTCAAGTTTCTTGCCTAGGAGCTTCAGCGTCAT 660
Query 657 CTCCTTCAAGAATGCTGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGC 716
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 661 CTCCTTCAAGAATGCTGAGGGCAAAGGCTGCTGCTGAGGAAGCTGTCTTGAACGCGCTGC 720
Query 717 CTGAGGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGAACC 776
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 CTGAGGCCACCGTCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGAATC 780
Query 777 CCTGGTCAATGTTCGTTAAAAAATATGGTTTCCTCCCGCTCATAGGTGGTGGAACCACCA 836
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 781 CCTGGTCAATGTTCGTTAAAAAATATGGTTTCCTGCCGCTCATAGGGGGTGGAACCACCA 840
Query 837 AATTCCAGCCTGTTTATGTGGTTGATGTTGCTGCTGCGATTGTTGCTGCTCTAAAGGATG 896
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 841 AATTCCAGCCTGTTTATGTGGTTGATGTTGCTGCTGCAATCGTTGCAGCTCTAAAGGACG 900
Query 897 ATGGCTCCAGCATGGGGAAAACATACGAATTGGGTGGTCCAGATGTCTTTACCACTCACG 956
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 901 ATGGCTCCAGCATGGGGAAAACATATGAATTGGGTGGTCCAGATGTCTTTACCACTCATG 960
Query 957 AGTTGGCAGAGATCATGTATGATATGATTCGTGAATGGCCTCGGTATGTGAAGCTTCCGT 1016
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 AGTTGGCTGAGATCATGTATGATATGATTCGTGAATGGCCTCGGTATGTGAAGCTTCCAT 1020
Query 1017 TTCCAATTGCCAAGGCAATGGCGGCTCCTCGAGACTTCATGGTGAACAAAGTCCCGTTCC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1021 TTCCAATTGCCAAGGCAATGGCGGCTCCTCGAGACTTCATGGTGAACAAAGTCCCATTCC 1080
Query 1077 CCTTACCCTCTCCTCAGATCTTCAACCTGGATCAAATCAATGCACTTACAACCGATACAC 1136
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1081 CCTTACCCTCTCCTCAGATCTTCAATCTGGATCAAATCAATGCACTGACAACCGATACAC 1140
Query 1137 TTGTATCTGACAACGCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGG 1196
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 TTGTATCTGACAAGGCCTTGAAGTTTCAGGATTTGGACCTTGTCCCCCATAAATTGAAGG 1200
Query 1197 GATATCCGGTCGAGTTTCTTATCCAATATCGCAAGGGTGGTCCTAACTTCGGTTCTACTG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GATATCCGGTCGAGTTTCTTATCCAATATCGCAAGGGTGGTCCTAACTTCGGTTCTACTG 1260
Query 1257 TCAGTGAAAAGATACCAACAGACTTCTACCCTTGATGCTGCTTCTCTGCTCAAAGGTCAT 1316
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCAGCGAAAAGATACCAACAGACTTCTACCCTTGATGCTGCTTCTCTGCTCAAAGGTCAT 1320
Query 1317 TTCCTGGACTAATTTTTTCATGCAAGTGTCACAATGAGATTGCGGAAACCAGATTTGCTA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTCCTGGACTAATTTTTTCATGCAAGTGTCACAATGAGATTGCGGAAACCAGATTTGCTA 1380
Query 1377 TGTTGATGACTTTCATTTACTTCTGTCAATAATAAACGGGTCCTCCTCTTTGTTGTGTTC 1436
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGTTGATGCCTTTCATTTACTTCTGTCAATAATAAACGGGTCCTCCTCTTTGTTGTGTTC 1440
Query 1437 TTGAAAAAA-TTATAACACATCAACATCATTATAAGTTAGAGAGGGGACAATATATTTCT 1495
| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1441 TGGAAAAAAATTATAACACTTCAACATCATTATAAGTTAGAGAGGGGACAATATCTTTCT 1500
Query 1496 TGATGTGG---TT-GGTCCCTTAGGATTTATGCAATGTCTGGTTCGTTTCGAACTCCATG 1551
||||| || || ||||||||||| ||||||| ||||||||| | ||| |||||||
Sbjct 1501 TGATGGGGCGATTTGGTCCCTTAGGGGTTATGCAGTGTCTGGTT--T--CGACCTCCATG 1556
Query 1552 TACTACTTC-C-CTTGAGTAAAACTAAAGCCATATGCTTTCAT--CTTTGCATTACATAT 1607
|||||||| | ||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1557 TACTACTTTTCTCTTGAGTTAAACTAAAGCCATATGCTTTCATATCTTTGCATTCCATAT 1616
Query 1608 AGCTCGGTGTTGTATGTTTTACTTACGACAAAACGTATCAACATGCATCTGTATGC 1663
|||| |||||||||||||| ||| |||||||||||| |||||||| ||||||||||
Sbjct 1617 AGCTTGGTGTTGTATGTTTCACTAACGACAAAACGTTTCAACATGAATCTGTATGC 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5