BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20362.1

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480864 jgi|Araly1|480864|fgenesh2_kg.3__3565__AT2G20362.1         689    0.0  


> Ahg480864 jgi|Araly1|480864|fgenesh2_kg.3__3565__AT2G20362.1
Length=530

 Score =  689 bits (373),  Expect = 0.0
 Identities = 431/459 (94%), Gaps = 4/459 (1%)
 Strand=Plus/Plus

Query  31   AAATGGAAGATGACGGAGACTATCCCGAACCCGAATCTGGCAGTGGTGGAATAAACTTAA  90
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  1    AAATGGAAGATGACGGAGACTATCCCGAACCCGAATCTGGCAGTGGTGGAATCAACTTGA  60

Query  91   ACGGGAGAAATGTTGGTGCGGTGATGGTGGCGCCTAGGGATGTAGACATAGCGAGTCAAA  150
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGGGAGAAATGTTGGTGCGGTGATGGTGGCGCCTAGGGATGTAGACATAGCGAGTCAAA  120

Query  151  GTGGTTGCAGGATCAATATCTACGTGAACAGCAATGTTCAAGCAACATGTGGTTCAGCTT  210
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGGTTGCAGGATCAACATCTACGTGAACAGCAATGTTCAAGCAACATGTGGTTCAGCTT  180

Query  211  TGATCGGTAGCAAGGTTAAGCTAAGAGATCCTGGTGTTCATCTCCATATAGATGACGTTA  270
            |||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct  181  TGATAGGTAGCAAGGTTAAGCTAAGAGATCCCGGTGTTCATCTCCATATCGAAGACGTTA  240

Query  271  AAATGACCCGCGACGATACCATATCTAGACAGAAGGAGATGACCTTGATTAAGGTTGGGT  330
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  241  AAATGACCCGCGACGATAACATATCTAGACAGAAGGAGATGAGCTTGATTAAGGTTGGGT  300

Query  331  TATGTTTGGTCTGTCTTTTTAACATGTTTCTAGTATTCATTCTCTTCCTCTCCTCTTGGT  390
            |||||||||||||||| |||||||| ||| ||||||||||| ||||| ||||||||||||
Sbjct  301  TATGTTTGGTCTGTCTCTTTAACATCTTTTTAGTATTCATTATCTTCATCTCCTCTTGGT  360

Query  391  TCCGGAAGGAAAGTGGTTCCGTATAGATCTC-CC-CATCAACCGATGATCATGCTAAGAA  448
            |||||||| ||| ||||||| |||||||||| || ||| ||| |||| ||||||||||||
Sbjct  361  TCCGGAAGAAAACTGGTTCCATATAGATCTCTCCTCATGAACTGATGTTCATGCTAAGAA  420

Query  449  GTAAGAACGATCTCG-CCTATAATTGTTTCCTCGATTTA  486
            |||||||| |||||| || ||||||  ||||||||||||
Sbjct  421  GTAAGAACTATCTCGTCC-ATAATTACTTCCTCGATTTA  458


 Score =  106 bits (57),  Expect = 2e-22
 Identities = 67/72 (93%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  540  TAACAGTCAAAAACACACCATATGTTGTCTTAATTCATATCATTCCAGATTAAATCGAAG  599
            |||| ||||||||||||   |||||||| |||||||||||||||||||||||||||||||
Sbjct  457  TAACGGTCAAAAACACATTTTATGTTGTATTAATTCATATCATTCCAGATTAAATCGAAG  516

Query  600  ATTAATGCTATA  611
            ||||||||||||
Sbjct  517  ATTAATGCTATA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22645012698


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5