BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20370.1
Length=2416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480865 jgi|Araly1|480865|fgenesh2_kg.3__3566__AT2G20370.1 3742 0.0
> Ahg480865 jgi|Araly1|480865|fgenesh2_kg.3__3566__AT2G20370.1
Length=2398
Score = 3742 bits (2026), Expect = 0.0
Identities = 2296/2421 (95%), Gaps = 39/2421 (2%)
Strand=Plus/Plus
Query 12 AGACCAGCTCAAAGCCAGGTC-AAAATCCATCAATC-CTGGCCTCATCAATGTTAAAAAT 69
||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||
Sbjct 1 AGACCAGCTCAAAGCCAGGTCAAAAATTCATCGATCTTTGGCCTCATCAATGTTAAAAAT 60
Query 70 CTTTACTTTCACACATCTCTAGATCTTCCATAGAAGGATCAAT-CAAAAGCTGTAATCTT 128
||| ||||||||||||||||||||||||| | ||||||| ||| ||||||| |||||||
Sbjct 61 CTTCACTTTCACACATCTCTAGATCTTCCCTTGAAGGATAAATAAAAAAGCTCTAATCTT 120
Query 129 TCTTTCTTCCTCGTAGCTCCTTCTCTTGCGGATCCTTGTCGGTACACTTCTACATTCTCA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTTTCTTCCTCGTAGCTCCTTCTCTTGCGGATCCTTGTCGGTACACTTCTACATTCTCA 180
Query 189 AATCTGATTCCTTTCTGGA-----GT-TGCTCCTGAGCTACGGTTCAGCTTCAATTACTT 242
||||||| ||||||||||| | ||| ||||||||||| || ||||||||||||||
Sbjct 181 AATCTGAATCCTTTCTGGATTTTTCTCTGCGCCTGAGCTACGATTTAGCTTCAATTACTT 240
Query 243 CGATCTCGTGTAAAAATCACTTCTAGAAGCTTTGATAAGCTTTGATAGGAGTTGGTTTTA 302
|||||||||||||||| ||| ||||| | | |||||||||||||||||||||
Sbjct 241 CGATCTCGTGTAAAAACCACCTCTAG-A-----G----GCTTTGATAGGAGTTGGTTTTG 290
Query 303 CTCTTTAGGGTTTTGTTTGAGTTTGATCTTTATT-GTATAGATG-TTGTGATCTTCGTAC 360
||||||| || | ||| | ||||||||| || ||||||||| |||||||||||||||
Sbjct 291 CTCTTTA-GG----G-TTG-G-TTGATCTTT-TTCGTATAGATGTTTGTGATCTTCGTAC 341
Query 361 ACTCTATATATGTTTCCAAGGGTTTCTATGAGGCGTCGCTCTGCTGAAGTTTCTCCTACA 420
|||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 342 ACTC--TATATGATTCCAAGGGTTTCTATGAGGCGTCGCTCTGCAGAAGTTGCTCCTACA 399
Query 421 GAGCCAATGGAGAAGGGAAATGGAAAAAATCAGACTAATCGAATCTGTTTGTTGGTTGCT 480
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 400 GAGCCTATGGAGAAGGGAAATGGGAAGAATCAGACTAATCGAATCTGTTTGTTGGTTGCT 459
Query 481 TTGTCACTCTTTTTCTGGGCATTGTTGTTGTACTTCCATTTTGTTGTCTTAGGGA-CTAG 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 460 TTATCACTCTTTTTCTGGGCATTGTTGTTGTACTTCCATTTTGTTGTCTTAGGGAGC-AG 518
Query 540 TAACATTGATAAACAGCTCCAATTGCAACCTAGTTATGCTCAATCTCAGCCATCATCAGT 599
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 519 TAACATTGATAAACAGATCCAATTGCAACCTAGTTATGCTCAGTCTCAGCCATCATCAAT 578
Query 600 CTCTCTTCGTGTTGATAAATTCCCTATAGAGCCTCATGCAGCTCCATCGAAACCACCTCC 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 579 CTCTCTTCGTGTTGATAAATTCCCTATAGAGCCCCATGCAGCTCCATCGAAACCACCTCC 638
Query 660 CAAAGAGCCTTTAGTTACTATCGATAAGCCAATACTCCCTCCTGCACCAGTAGCCAATTC 719
||||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||
Sbjct 639 TAAAGAGCCTTTAGTTGCGATCGATAAGCCAGTACTCCCTCCTGCACCAGTAGCTAATTC 698
Query 720 TAGTTCCACCTTTAAGCCACCTAGAATTGTTGAGAGCGGGAAGAAACAGGAGTTTTCGTT 779
|| | ||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 699 TACTACCACCTTTAAGCCGCCTAGAATTGTTGAGAGTAGGCAGAAACAGGAGTTTTCGTT 758
Query 780 TATAAGAGCCTTGAAGACAGTAGACAACAAGAGTGACCCTTGTGGAGGGAAGTACATTTA 839
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 759 TATAAGAGCGTTGAAGACAGTAGACAACAAGAGTGACCCTTGCGGAGGGAAGTACATTTA 818
Query 840 TGTTCACAATCTACCCTCAAAGTTCAATGAGGATATGCTTAGAGACTGTAAGAAGCTTAG 899
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TGTTCATGATCTACCCTCCAAGTTCAATGAGGATATGCTTAGAGACTGTAAGAAGCTTAG 878
Query 900 TCTCTGGACTAACATGTGTAAGTTCACAACCAATGCTGGCCTTGGGCCGCCGCTTGAGAA 959
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 879 TCTCTGGACTAACATGTGCAAGTTCACAACCAATGCTGGCCTTGGCCCGCCGCTTGAGAA 938
Query 960 TGTTGAAGGTGTCTTCTCTGATGAAGGTTGGTATGCGACTAATCAGTTTGCTGTTGATGT 1019
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 939 TGTTGAAGGTGTCTTCTCGGATGAAGGCTGGTACGCGACTAATCAGTTTGCTGTTGATGT 998
Query 1020 GATATTCAGCAACCGGATGAAGCAGTACAAATGTTTGACAAATGATTCTTCCCTTGCTGC 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 999 GATATTCAGCAACCGGATGAAGCAGTACAAATGTTTGACGAATGATTCTTCTCTTGCTGC 1058
Query 1080 TGCCATCTTTGTGCCGTTCTATGCTGGATTCGACATTGCTAGGTATCTGTGGGGATACAA 1139
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1059 TGCCATCTTTGTGCCGTTTTATGCTGGATTCGACATTGCTAGGTACCTGTGGGGATACAA 1118
Query 1140 TATCTCGAGAAGGGATGCTGCTTCGCTTGAGTTGGTCGATTGGCTCATGAAGCGGCCTGA 1199
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1119 TATCTCAAGAAGGGATGCTGCTTCGCTTGAGTTGGTTGATTGGCTCATGAAGCGGCCTGA 1178
Query 1200 GTGGGATATAATGAGGGGAAAAGATCATTTCCTTGTGGCGGGTAGGATAACGTGGGATTT 1259
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GTGGGAAATAATGAGAGGAAAAGATCATTTCCTTGTGGCGGGTAGGATAACGTGGGATTT 1238
Query 1260 TAGGAGATTGTCTGAAGAAGAAACTGATTGGGGCAACAAGCTTCTCTTCTTACCGGCTGC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1239 TAGGAGATTGTCTGAAGAAGAAACTGATTGGGGCAACAAGCTTCTCTTCTTACCAGCTGC 1298
Query 1320 CAAGAACATGTCTATGCTTGTGGTTGAGTCGAGCCCATGGAATGCTAATGATTTTGGGAT 1379
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1299 CAAGAACATGTCTATGCTTGTGGTTGAGTCGAGTCCATGGAACGCAAATGATTTTGGGAT 1358
Query 1380 CCCGTACCCAACCTACTTCCACCCAGCAAAGGACTCAGAGGTTTTTGAATGGCAAGACCG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 CCCGTACCCAACCTACTTCCACCCAGCAAAGGACTCAGAGGTTTTTGAATGGCAAGACCG 1418
Query 1440 GATGAGAAACCTGGAAAGGAAGTGGCTTTTCTCGTTTGCAGGAGCCCCACGACCTGACAA 1499
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1419 GATGAGAAACCTGGAAAGGAAATGGCTTTTCTCATTTGCAGGAGCCCCACGACCTGACAA 1478
Query 1500 TCCGAAATCTATCAGAGGGCAGATCATTGATCAATGTCGAAACTCAAATGTTGGCAAATT 1559
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1479 TCCGAAATCCATCAGAGGGCAGATCATTGATCAATGCCGAAACTCAAATGTTGGCAAATT 1538
Query 1560 ATTAGAATGCGATTTTGGGGAGAGCAAATGCCATGCACCAAGCAGCATTATGCAAATGTT 1619
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1539 ATTAGAATGCGATTTTGGGGAGAGCAAATGTCATGCACCAAGCAGCATTATGCAAATGTT 1598
Query 1620 TCAAAGCTCTCTCTTCTGCCTGCAGCCACAGGGAGACTCTTACACCCGAAGATCGGCATT 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 TCAAAGCTCTCTCTTCTGCCTGCAGCCACAGGGAGACTCTTACACCCGAAGATCGGCATT 1658
Query 1680 TGACTCAATGCTTGCCGGTTGTATACCGGTCTTCTTCCATCCGGGTTCAGCCTACACGCA 1739
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1659 TGACTCAATGCTTGCCGGTTGTATACCGGTCTTCTTCCATCCAGGCTCAGCCTACACCCA 1718
Query 1740 ATACACGTGGCATCTACCCAAGAACTACACAACCTACTCGGTATTCATCCCCGAGGATGA 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 ATACACGTGGCATCTACCCAAGAACTACACAACCTACTCGGTATTCATCCCCGAGGATGA 1778
Query 1800 TGTTCGGAAGAGAAACATAAGCATCGAGGAGCGACTCCTCCAGATTCCAGCCAAGCAGGT 1859
| |||||||||||||||| ||||| |||||||||||||| ||||||||| || |||||||
Sbjct 1779 TATTCGGAAGAGAAACATTAGCATTGAGGAGCGACTCCTTCAGATTCCACCCGAGCAGGT 1838
Query 1860 CAAGATAATGAGAGAGAATGTCATCAACCTCATCCCAAGGCTGATCTACGCAGACCCGAG 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 CAAGATAATGAGAGAGAATGTCATCAACCTCATCCCAAGGCTGATCTACGCAGACCCGAG 1898
Query 1920 ATCAGAACTGGAGACGCAGAAAGATGCATTTGATGTCTCGGTACAGGCTGTGATAGACAA 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 ATCAGAACTGGAGACGCAGAAAGATGCATTTGATGTCTCGGTACAGGCTGTGATAGACAA 1958
Query 1980 GGTGACTCGGTTAAGGAAGAACATGATCGAGGGCCGAACCGAGTATGACTACTTCGTGGA 2039
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1959 GGTGACTCGGTTAAGGAAGAACATGATCGAGGGACGAACCGAGTATGACAACTTCGTGGA 2018
Query 2040 GGAGAACAGCTGGAAGTATGCGTTGCTGGAGGAAGGCCAACGGGAAGCAGGGGGCCATGT 2099
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2019 GGAGAACAGCTGGAAGTATGCGTTGCTGGAGGAAGGCCAACGGGAAGCTGGGGGCCATGT 2078
Query 2100 GTGGGACCCGTTCTTCTCCAAACCAAAGCCCGGAGAAGATGGCAGCAGCGATGGTAATGG 2159
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2079 GTGGGACCCGTTCTTCTCCAAACCAAAGCCCGGAGAAGATGGCAGCAGCGATGGCAATGG 2138
Query 2160 AGGCACGACTATTTCAGCAGATGCAGCTAAGAATTCATGGAAGAGTGAGCAGAGAGATAA 2219
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 AGGCACGACAATTTCAGCAGATGCAGCTAAGAATTCATGGAAGAGTGAGCAGAGAGATAA 2198
Query 2220 GACACAGTGAAAAGAGACAGAA--A-CCACATTTTGTTACGGTTTTG-ATATAGTTTTCG 2275
|||||| ||||||||||||||| | ||||||||||||||||||| | |||||| |||||
Sbjct 2199 GACACAATGAAAAGAGACAGAAGCAGCCACATTTTGTTACGGTTTGGGATATAGATTTCG 2258
Query 2276 GTTACTATTTATACGGACAAAAAATGATTTATTTTTGTTGTATTGGTATCAAATGTAGTT 2335
||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2259 GTTACAATT-ATACGGACAAAAAATGATGTATTTTTGTTGTATTGGTATCAAATGTAGTT 2317
Query 2336 TCTCCAGTTTCATAGAGATAAGTTTGTTTGTATCAGTTACCCACAGAAATTAATAATAAG 2395
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2318 TCTCCAGTTTCATAGAGATAAGTTTGTTTGTATCAGGTACCCACAGAAATTAATAATAAG 2377
Query 2396 AAGTGACCCTTTTCAAGTTTC 2416
|||||||||||||||||||||
Sbjct 2378 AAGTGACCCTTTTCAAGTTTC 2398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91035685550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5