BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20380.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319889 jgi|Araly1|319889|fgenesh1_pm.C_scaffold_3002905 654 0.0
Ahg952063 jgi|Araly1|952063|scaffold_3400007.1 327 7e-89
Ahg949357 jgi|Araly1|949357|scaffold_801244.1 283 2e-75
> Ahg319889 jgi|Araly1|319889|fgenesh1_pm.C_scaffold_3002905
Length=1092
Score = 654 bits (354), Expect = 0.0
Identities = 554/645 (86%), Gaps = 36/645 (6%)
Strand=Plus/Plus
Query 421 GATTCTCTG-AACTGTGTTGAAGTGTACAACACAGACACTCAAACTTGGATTCCTGTGCC 479
|||||| || ||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 466 GATTCTTTGAAAC-GTGTTGAAGTGTACAACATAGAGACTCAAACTTGGATTCCTGTGCC 524
Query 480 GCCCAACAAACGGATATTCAAACTCCA-ACATATGAAAGGAATGCTTTACATGAAAGTTA 538
|||||||||||||| | ||||||| || |||||||||||||| |||||||||||| |||
Sbjct 525 GCCCAACAAACGGAGAGTCAAACT-CATACATATGAAAGGAAAGCTTTACATGAACGTTG 583
Query 539 GTAAACTTTTGAGCTTTGTTGCACAGGATGCTGAGGAGCTTGCGCCTTTATTTCCGAAGC 598
|||||||||||| | | | ||||||| || || ||||||| || |||
Sbjct 584 GTAAACTTTTGA-----G-T---C---TTGCTGAGAAGGTTTTGCCTTTAAACCCAAAGG 631
Query 599 TTCGGTCA-T-----TACT-T-T-CTACGGAGGTTGTGGCTTTTAAGCCAAAGGTTTCG- 648
|||| ||| | || | | | ||| ||| ||| ||||||||||||| |||||| |
Sbjct 632 TTCGATCATTGGAAATAATGTCTCCTAGGGATGTTATGGCTTTTAAGCCTGAGGTTT-GT 690
Query 649 GAAGG-ATATGAAGTGTTAGGATT---TTCGGTCAATACAGATTTAGGTCGAGGTTCTTT 704
| || || ||||| ||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 691 G-GGGCATTTGAAGCGTTAGGATTGGATACGGTCAATACAGATTTAAATCGAGGTTCTTT 749
Query 705 TTGCATGATAGAGGAGATTACCTATCATTATGACCCCAGTGTAAAGTTTAGATGGAGAAG 764
||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 750 TTGTATGATAGAGGAGATGACCTATCATTATGACCCTAGTGTAAAGTTTAGATGGAGAAA 809
Query 765 AAGACA-GGGAGGAGTTTGGAGATCATTAGTGGGATTAGAAGGGCTACCTAAGTTTGCTA 823
||| | |||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 810 AAG-TATGGGAGGAGTTTGGAGAACATTAGGGGGCTTAGAAGGGCTACCTAAGTTTGCTA 868
Query 824 GATATAGTAGTGTTAAGTTGGCGGATTGTGGTGGTAAGCTGGTTGTTTTGTGGCACAAGT 883
||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 869 GATATAGTACTGTTAAATTGGCGGATTGTGGTGGTAAGCTGGTTGTTTTGTGGGACAAGT 928
Query 884 ATGTGCCTGCAAGTGGGTATGAGGAGAAGATGGTTTGGTGCGCAGAAATTTCCCTTGAAA 943
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 929 ATGTGCCTGCAAGTGGGTATGAGGAGAAGATGATTTGGTGTGCAGAAATTTCGCTTGAAA 988
Query 944 AGCGCAGCAA-GAAAGAGATTTGGGGGAAGATCGAGTGGTTCGATGCAGTTCTTAGAGTC 1002
||||| ||| ||| ||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 989 GGCGCAACAAAGAA-GAGATTTTGGGGAAGGTCGAGTGGTTCGATGCAGTTCTTACAGTC 1047
Query 1003 CCTAAGTATTACCAATTCGTTGGGGCTAAATCTGCTACTGTTTGA 1047
||||||| |||| |||| |||| |||||||||||||||||||||
Sbjct 1048 CCTAAGTCTTACAAATTTGTTGATGCTAAATCTGCTACTGTTTGA 1092
Score = 470 bits (254), Expect = 1e-131
Identities = 379/433 (88%), Gaps = 34/433 (8%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTCTCCAGAGAAGAAGAGGAGGAAGAAACT-GTCACCAGAATCGAACTCACT 59
|||||||||||||| |||||| | | |||||||||| | |||||| | | |||||||
Sbjct 1 ATGTCGTCGTCTCCCGAGAAG-A-A-GAGGAAGAAA-TGGTCACC---A--G-ACTCACT 50
Query 60 TCCGAATGATTTGATAGTGACCATCTTAGCCCGCCTCTCGCAATCATATTACCCTAAGCT 119
||| |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 51 TCCCTATGATTTGATTGTGACCATCTTAGCCCGCCTCTCGCGATCCTATTACCCTAAGCT 110
Query 120 CTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAGACTCG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 111 CTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACCAAACCCG 170
Query 180 AATCCTCTTAAGCCGCACTGAGACATTTCTCTATGTTTGCTTAAGCTTTCCTGGTGAACC 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 171 AATCCTCTTAAGCCGCACTGAGACACTTCTCTATGTTTGCTTAAGCTTTCCTGATGAAGC 230
Query 240 TAACCCTGGCTGGTTCACTCTCTACCGGAAACCTAATCAAACCCTTACCACTAA-AA-A- 296
||||||| ||||||||||||||||||| ||||||||||| | || |||||||| || |
Sbjct 231 TAACCCTCGCTGGTTCACTCTCTACCGAAAACCTAATCAGATCCACACCACTAAGAAGAA 290
Query 297 ---GAAGAA-AAA--T-----A-GTGTTCATCTTTTGGCTCCAA------TCCTCAACTC 338
|||||| ||| | | ||||||||||||||||||||| ||||||||||
Sbjct 291 TAAGAAGAAGAAAGATGGTTCAAGTGTTCATCTTTTGGCTCCAACACCGATCCTCAACTC 350
Query 339 TCCTCCTGTGGAATTCCCAAGTCT-CATCGCTGTTGGTTCTTATCTTTATGCCTTTAGAG 397
|||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 351 TCCTCCTGTGGAATTCTCAAGTCTTC-TCGCTGTTGGTTCTTATCTTTATGCCTTTAGCG 409
Query 398 CAGCCATTGAAGA 410
||||||| |||||
Sbjct 410 CAGCCATGGAAGA 422
> Ahg952063 jgi|Araly1|952063|scaffold_3400007.1
Length=1205
Score = 327 bits (177), Expect = 7e-89
Identities = 314/378 (83%), Gaps = 17/378 (4%)
Strand=Plus/Plus
Query 680 ATACAGATTTAGG-TCGA-GGTTCTTTTTGCATGATAGAGGAGATTA-CCTATCATTATG 736
|||| ||||| || || | |||||| |||| || |||||| | | || ||||| |||||
Sbjct 815 ATACGGATTT-GGTTC-AGGGTTCTATTTGTATAATAGAGAACA-TAGCCTATTGTTATG 871
Query 737 ACCCCAGTGTAAAGTTTAGATGGAGAAGAA---GACAGGGA-GGAGTTTGGAGATCATTA 792
|||| |||| ||||||||| |||| || || ||| || | || ||||||| ||||
Sbjct 872 ACCCTAGTGAAAAGTTTAGTTGGATAA-AATTTAACACTGACGAAGATTGGAGAAGATTA 930
Query 793 GTGGGATTAGAAGGGCTACCTAAGTTTGCTAGATATAGTAGTGTTAAGTTGGCGGATTGT 852
| ||| |||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 931 GAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGATTAC 990
Query 853 GGTGGTAAGCTGGTTGTTTTGTGGCACAAGTATGT-GCCTGCAAGTGGGTATGAGGAGAA 911
|||||||||||||||||||| ||| |||||||||| || ||||| ||| ||| |||||||
Sbjct 991 GGTGGTAAGCTGGTTGTTTTTTGGGACAAGTATGTAGC-TGCAACTGGTTATAAGGAGAA 1049
Query 912 GATGGTTTGGTGCGCAGAAATTTCCCTTGAAAAGCGCAGCAA-GAAAGAGATTTGGGGGA 970
|||| ||||||| ||||| ||||| ||||||||||||| || ||| |||||||||||||
Sbjct 1050 GATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAA-GAGATTTGGGGGA 1108
Query 971 AGATCGAGTGGTTCGATGCAGTTCTTAGAGTCCCTAAGTATTACCAATTCGT-TGGGGCT 1029
|| |||||||||| ||||| ||||||| ||||||||||| ||| ||||||| || | |
Sbjct 1109 AGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTGTGTGCC- 1167
Query 1030 AAATCTGCTACTGTTTGA 1047
||||||||| ||||||||
Sbjct 1168 AAATCTGCTTCTGTTTGA 1185
Score = 250 bits (135), Expect = 2e-65
Identities = 213/250 (85%), Gaps = 7/250 (3%)
Strand=Plus/Plus
Query 55 TCACTTCCGA-ATGATTTGATAGTGACCATCTTAGCCCGCCTCTCGCA-ATCATATTACC 112
|||||||| | |||||||| |||||| ||||||||||||| ||||| | ||| ||| |||
Sbjct 112 TCACTTCC-AGATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCG-AGATCGTATCACC 169
Query 113 CTAAGCTCTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTACC 172
| || ||||||||||||| |||| |||| || | || ||||||||||||||||||||||
Sbjct 170 CAAATCTCTCCTTAGTCTGTAAAAGCTTCCGATCGATTCTTGCTTCACCGGAGCTTTACC 229
Query 173 AGACTCGAATCCTCTTAAGCCGCACTGAGACATTTCTCTATGTTTGCTTAAGCTTTCCTG 232
||||||||| ||||||| || || ||||| ||||||||||| |||||| |||| ||||
Sbjct 230 AGACTCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCTTACGCTTCCCTG 289
Query 233 GTGAACCTAACCCTGGCTGGTTCACTCTCTACCGGAAACCTAATCAAACCCTTACCACTA 292
|||| |||| ||| ||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 290 ATGAAGCTAATCCTCGCTGGTTCACTCTCTACCGGAAACCTAATCAAAACCT-A--ACTA 346
Query 293 AAAAGAAGAA 302
| ||||||||
Sbjct 347 AGAAGAAGAA 356
> Ahg949357 jgi|Araly1|949357|scaffold_801244.1
Length=1202
Score = 283 bits (153), Expect = 2e-75
Identities = 305/374 (82%), Gaps = 27/374 (7%)
Strand=Plus/Plus
Query 55 TCACTTCCGA-ATGATTTGATAGTGACCATCTTAGCCCGCCTCTCGCA-ATCATATTACC 112
|||||||| | |||||||| |||||| ||||||||||||| ||||| | ||| ||| |||
Sbjct 112 TCACTTCC-AGATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCG-AGATCGTATCACC 169
Query 113 CTAA-GCTCTCCTTAGTCTCCAAAACCTTCAGAGCAATCCTTGCTTCACCGGAGCTTTAC 171
| || ||||||||||||||||||| |||| || | |||||||||||||||||||| |||
Sbjct 170 C-AATTCTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCACCGGAGCTATAC 228
Query 172 CAGACTCGAATCCTCTTAAGCCGCACTGAGACATTTCTCTATGTTTGCTTAAGCTTTCCT 231
|| || |||| ||||||| || || ||||| ||||||||||| |||||| |||| |||
Sbjct 229 CAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCTTACGCTTCCCT 288
Query 232 GGTGAACCTAACCCTGGCTGGTTCACTCTCTACCGGAAACCTAATCAAACCCT---T-AC 287
|||| |||||||| ||||||||||||| ||||||||||||||||||||||| | |
Sbjct 289 AATGAAGCTAACCCTCGCTGGTTCACTCTTTACCGGAAACCTAATCAAACCCTAACTAAG 348
Query 288 CACTA-AA-AAGAAGAA-AAATA-G--T---GT-TC-ATCTTTTGGCTCCAA--TC---- 330
| | || |||||||| ||| | | | || | ||||||||||||||| ||
Sbjct 349 AAGAAGAAGAAGAAGAAGAAAGAGGATTCAAGTGGCAATCTTTTGGCTCCAATTTCAATT 408
Query 331 CTCAACTCTCCTCCTGTGGAATTCCCAAGTCTCATCGCTGTTGGTTCTTATCTTTATGCC 390
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 409 CTCAACTCTCCTCCTTTGGAATGGTCAAGTCTCATCGCTGTTGGTTCTTATCTTTACGCC 468
Query 391 TTTAGAGCAGCCAT 404
||| ||||||||
Sbjct 469 ATTACCGCAGCCAT 482
Score = 126 bits (68), Expect = 3e-28
Identities = 99/114 (87%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 421 GATTCTCTGAACTGTGTTGAAGTGTACAACACAGACACTCAAACTTGGATTCCTGTGCCG 480
|||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 622 GATTCTTTGAACTGTGTTGAAGTGTACAACACAGAGACTCAAGCTTGGAATCCTGTGCCG 681
Query 481 CCCAACAA-ACGGATATTCAAACTCCAACATATGAAAGGAATGCTTTACATGAA 533
||||| || |||||||||| || | || || || |||||| | ||||||||||
Sbjct 682 CCCAA-AAGACGGATATTCGAATTAGAAAATTTGGAAGGAACGATTTACATGAA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5