BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20390.2
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480866 jgi|Araly1|480866|fgenesh2_kg.3__3567__AT2G20390.1 664 0.0
> Ahg480866 jgi|Araly1|480866|fgenesh2_kg.3__3567__AT2G20390.1
Length=821
Score = 664 bits (359), Expect = 0.0
Identities = 401/421 (95%), Gaps = 3/421 (1%)
Strand=Plus/Plus
Query 1 CTCGCTGCTTCGGGTCGAATCAGCGAGTCGGGTC-AAAATTCACCTGAGAAAAATGTTCG 59
||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 23 CTCGCTGCTCCGGGTCAAATCAGCGAGTCGGGTCGAAAATTCACCTGAGAAAAATGTTCG 82
Query 60 CGAGGCGGTTCACTTCGTTCTTCAAAGGATCTTCAACCTCAA-GCCCGGACAAAACAGCT 118
|||||||| || | || ||||||||||||||||||||||||| | | | |||| || |
Sbjct 83 CGAGGCGGCTCTCGTCCTTCTTCAAAGGATCTTCAACCTCAAGGTACTCA-AAAAAAGTT 141
Query 119 GGGACATTGGGCTCTTTTGGTCGCAAGGCAGTGTCTTTCGTCTTGATTACAGTCACTGGT 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 142 GGGACATTGGGCTCTTTTGGTCGCAAGGCAGTGTCTTTTGTCTTGATTACAGTCACTGGT 201
Query 179 GGTGTTGCTTTGAGTGCTCTCGATGATCTTTCTATCTATCGTGGATGTAGCAGCAAGGCG 238
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 202 GGTGTTGCTTTGAGTGCTCTCGATGATCTTTCTATCTATCGTGGGTGTAGCAGCAAGGCG 261
Query 239 ATGGAGAAGGTGATGAATAGTAAGGTGATGATTGAAGCCATCGGAGAGCCAATTGAGAAA 298
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 262 ATGGAGAAGGTGATGAATAGTAAGGCGATGATTGAAGCCATTGGAGAGCCAATTGAGAAA 321
Query 299 GGGCCATGGTACAATGCTTCACTAGCTGTTTCTCACCAAAGGCACTCAGTGTCTTGTTCA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GGGCCATGGTACAATGCTTCACTAGCTGTTTCTCACCAAAGGCACTCAGTGTCTTGTTCA 381
Query 359 TTCCCTGTGATTGGACCACAAGGCACAGGAATCTTGCATCTCAAAGCTGTTCGCAATGGA 418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 382 TTCCCTGTGATTGGACCACAAGGCACCGGAATCTTGCATCTCAAAGCTGTTCGCAATGGA 441
Query 419 G 419
|
Sbjct 442 G 442
Score = 401 bits (217), Expect = 3e-111
Identities = 295/329 (90%), Gaps = 20/329 (6%)
Strand=Plus/Plus
Query 526 AGAAGATAGCATGTTCGGGTTTCTCCAGCAAAGGGACTGGGACATTCTGATAATGGACGC 585
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 441 AGAAGATAGCATGTTCGGGTTTCTCAAGCAAAGGGACTGGGACATTCTGATAATGGACGC 500
Query 586 ACTTGTCCATGTCCCGTCAAACGAGGGACCCCAACAAACCTTGAGAATCAACGTTACTGA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 501 ACTTGTCCATGTCCCGTCAAACGAGGGACCCCAACAAACCTTGAGAATCAACGTTTCTAA 560
Query 646 CATCGTTGATCCTTCGCCTGGTACCCACGATAAACCTTTGGAACCATTagagccagagaa 705
||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||
Sbjct 561 CATCGTTGATCCTTCGCCTGGTACCGACGATAAACCTTCGGTACCACAAGAGCCAGAGAA 620
Query 706 gagctaaaaagagaaagagagagagagagagaACGCTTGGTGGAGCTCCTGGCTA-GGGT 764
|||||||| ||||| |||||| | ||| | |||||||||||||||| ||||
Sbjct 621 GAGCTAAACAGAGA--GAGAGA-A---------CGCATCGTGGAGCTCCTGGCTATGGGT 668
Query 765 TTTATTCCATTCCATT--AT-AT--CTTGTGGAACAAGAGAGAGAATTGGGTCTTTTATT 819
|||||||||||||||| || || |||||||| ||| ||||||||||||||||||||||
Sbjct 669 TTTATTCCATTCCATTCCATTATATCTTGTGGAGCAACAGAGAGAATTGGGTCTTTTATT 728
Query 820 TACTAATAATGAACAATTT-TTT-AGGAG 846
||||||||||||||| ||| ||| |||||
Sbjct 729 TACTAATAATGAACACTTTCTTTTAGGAG 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5