BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20410.1 Length=1324 Score E Sequences producing significant alignments: (Bits) Value Ahg931906 jgi|Araly1|931906|scaffold_304363.1 1029 0.0 > Ahg931906 jgi|Araly1|931906|scaffold_304363.1 Length=1025 Score = 1029 bits (557), Expect = 0.0 Identities = 608/633 (96%), Gaps = 2/633 (0%) Strand=Plus/Plus Query 105 GATTTTGGAAGAAAAAGAGTGATGAGTCGTGGGAATTACAAGAACCCGTGCTTGACCATG 164 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATTTTGGAAGAGAAAGAGTGATGAGTCGTGGGAATTACAAGAACCCGTGCTTGACCATG 60 Query 165 CATCAGCCATGGGCATCACTTCTCGTCCATGGTATCAAACGCATCGAAGGCAGATCCTGG 224 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 CATCAGCCATGGGCTTCACTTCTCGTCCATGGAATCAAACGCATCGAAGGCAGATCCTGG 120 Query 225 CCTTCCCCAATTCGAGGCCGTTTATGGATTCATGCTGCAAGTAAAGTACCTGATGAAGCT 284 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 CCTTCCCCAATTCGAGGCCGTTTATGGATTCATGCTGCTAGTAAAGTACCTGATGAAGCT 180 Query 285 ACTATCAAAGCAATGGAAGAGTTTTACCAACAAATTTATGCTGTTGATGGGATCACTGAT 344 ||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||| Sbjct 181 ACTATTAAAGCAATGGAAGAGTTTTACCGAGAAATTTATGCTGTTGATGGCATCACTGAT 240 Query 345 ATTCAATTCCCCCAACATTACCCTGTTTCAAGACTAATTGGATGTGTTGAGGTTGTTGGA 404 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATTCAATTCCCCCAACATTACCCTGTTTCAAGACTAATTGGATGTGTTGAGGTTGTTGGC 300 Query 405 TGTGTCACCTCCGATGAGCTTCAGAACTGGGATGCTTTACCTCAAGGGGTGAGGCTTGAA 464 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGTGTCACCTCCGATGAACTTCAGAACTGGGATGCTTTACCTCAAGGGGTGAGGCTTGAA 360 Query 465 GGACAAACTAACTTTTGTTGGCTATGTGAG-AAGCCACAGAAACTGATTATTCCATTTGA 523 |||||||| || |||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct 361 GGACAAACCAATTTTTGTTGGCTATGTGAGCAA-CCACAGAAACTAATTATTCCATTTGA 419 Query 524 GATGCGTGGGTACCAGGGCGTCTATAACTTAGAGAATAAGATTTATGTAGCAGCAGCTAG 583 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 420 GATGCGTGGGTACCAGGGCGTCTATAACTTAGAAAATAAGATTTATGTAGCAGCAGCTAG 479 Query 584 AGGTCTTATGCCTTCTCAAAACTCTTTTAAGGTGAAATTCCCTCTTCCTGACCCAAAAGA 643 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 480 AGGTCTTATGCCTTCTCAAAACTCTTTTAAGGTGAAATTCCCTCTTCCAGACCCAAAAGA 539 Query 644 CCCGTTTTCCTTAAAACCTGGTTCTATTCCTTGTACAATGCAAGAGAAGAAAGAACTTGA 703 ||||||||| |||||||| ||||||||||||||||||| || |||||||||| |||||| Sbjct 540 CCCGTTTTCTTTAAAACCCGGTTCTATTCCTTGTACAACACATGAGAAGAAAGCACTTGA 599 Query 704 TTCAAAGCAAGTTACCAGCCTCACAGCTGCAAT 736 |||| ||||||||||||| |||||||||||||| Sbjct 600 TTCAGAGCAAGTTACCAGTCTCACAGCTGCAAT 632 Score = 645 bits (349), Expect = 0.0 Identities = 405/431 (94%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 736 TCA-AGCAAGTTACCAGCCTCACAGCTGCAATCGCCGGTGCAAAAGCAGCGGCGACACAA 794 ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 601 TCAGAGCAAGTTACCAGTCTCACAGCTGCAATTGCCGGTGCAAAAGCAGCGGCGACACAA 660 Query 795 TTTTCTAAGAAGGGACAAAGTCTCCAAACAAATAATATATTTGATTACACAACAAGAAGC 854 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TTTTCAAAGAAGGGACAAAGTCTCCAAACAAATAATATATTTGATTACACAACAAGAAGC 720 Query 855 AAGAGCAAAGTTATTGAAGATGAAGCAGCAGAATCCCTAGATAACCCGGTTCTTGGTTCT 914 ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 721 AAGAGCAAAGTTATTGAAGATGATGCATCAGAATCCCTGGATAACCCGGTTCTTGGTTCT 780 Query 915 GGTGGAACGTCTGACCGTACTTATAGAACAAGAAGCAAGAACAGAGGCACACAGATGGGT 974 |||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| Sbjct 781 GGTGGAACGTGTGACCATACTTATACAACAAGAAGCAAGAACAAAGGCACACAGATGGGT 840 Query 975 GAAGAAGTATGTAGTGAAAGCAGCAACAGCAGCAGCAAAGTTGAATCTAGTCAAAGAAGT 1034 ||||||||||||||||||||||||| ||||||| | || |||||||||||||||||| Sbjct 841 GAAGAAGTATGTAGTGAAAGCAGCA---GCAGCAG-A--GTGGAATCTAGTCAAAGAAGT 894 Query 1035 GCAGTCACAAAGAGTGAGGACAGGAATACAAGAATTGGTGAAAGAAGGTTTGATCCTGGA 1094 | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 895 GTAGTCACAAAGAGAGAGGACAGGAATACAAGTATTGGTGAAAGAAGGTTTGATCCTGGA 954 Query 1095 TCTGCCCGGATCATGGCCGCTGCAATTAGGAACTTGAAGCCACCTTCTTGATCTAATGCG 1154 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || | Sbjct 955 TCTGCCCGGATTATGGCCGCTGCAATTAGGAACTTGAAGCCACCGTCTTGATCTATTGTG 1014 Query 1155 TCAAGGTTGTA 1165 |||||||||| Sbjct 1015 ACAAGGTTGTA 1025 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49521669183 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5