BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20410.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931906 jgi|Araly1|931906|scaffold_304363.1 1029 0.0
> Ahg931906 jgi|Araly1|931906|scaffold_304363.1
Length=1025
Score = 1029 bits (557), Expect = 0.0
Identities = 608/633 (96%), Gaps = 2/633 (0%)
Strand=Plus/Plus
Query 105 GATTTTGGAAGAAAAAGAGTGATGAGTCGTGGGAATTACAAGAACCCGTGCTTGACCATG 164
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTTTGGAAGAGAAAGAGTGATGAGTCGTGGGAATTACAAGAACCCGTGCTTGACCATG 60
Query 165 CATCAGCCATGGGCATCACTTCTCGTCCATGGTATCAAACGCATCGAAGGCAGATCCTGG 224
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CATCAGCCATGGGCTTCACTTCTCGTCCATGGAATCAAACGCATCGAAGGCAGATCCTGG 120
Query 225 CCTTCCCCAATTCGAGGCCGTTTATGGATTCATGCTGCAAGTAAAGTACCTGATGAAGCT 284
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CCTTCCCCAATTCGAGGCCGTTTATGGATTCATGCTGCTAGTAAAGTACCTGATGAAGCT 180
Query 285 ACTATCAAAGCAATGGAAGAGTTTTACCAACAAATTTATGCTGTTGATGGGATCACTGAT 344
||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct 181 ACTATTAAAGCAATGGAAGAGTTTTACCGAGAAATTTATGCTGTTGATGGCATCACTGAT 240
Query 345 ATTCAATTCCCCCAACATTACCCTGTTTCAAGACTAATTGGATGTGTTGAGGTTGTTGGA 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTCAATTCCCCCAACATTACCCTGTTTCAAGACTAATTGGATGTGTTGAGGTTGTTGGC 300
Query 405 TGTGTCACCTCCGATGAGCTTCAGAACTGGGATGCTTTACCTCAAGGGGTGAGGCTTGAA 464
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTGTCACCTCCGATGAACTTCAGAACTGGGATGCTTTACCTCAAGGGGTGAGGCTTGAA 360
Query 465 GGACAAACTAACTTTTGTTGGCTATGTGAG-AAGCCACAGAAACTGATTATTCCATTTGA 523
|||||||| || |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 361 GGACAAACCAATTTTTGTTGGCTATGTGAGCAA-CCACAGAAACTAATTATTCCATTTGA 419
Query 524 GATGCGTGGGTACCAGGGCGTCTATAACTTAGAGAATAAGATTTATGTAGCAGCAGCTAG 583
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GATGCGTGGGTACCAGGGCGTCTATAACTTAGAAAATAAGATTTATGTAGCAGCAGCTAG 479
Query 584 AGGTCTTATGCCTTCTCAAAACTCTTTTAAGGTGAAATTCCCTCTTCCTGACCCAAAAGA 643
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AGGTCTTATGCCTTCTCAAAACTCTTTTAAGGTGAAATTCCCTCTTCCAGACCCAAAAGA 539
Query 644 CCCGTTTTCCTTAAAACCTGGTTCTATTCCTTGTACAATGCAAGAGAAGAAAGAACTTGA 703
||||||||| |||||||| ||||||||||||||||||| || |||||||||| ||||||
Sbjct 540 CCCGTTTTCTTTAAAACCCGGTTCTATTCCTTGTACAACACATGAGAAGAAAGCACTTGA 599
Query 704 TTCAAAGCAAGTTACCAGCCTCACAGCTGCAAT 736
|||| ||||||||||||| ||||||||||||||
Sbjct 600 TTCAGAGCAAGTTACCAGTCTCACAGCTGCAAT 632
Score = 645 bits (349), Expect = 0.0
Identities = 405/431 (94%), Gaps = 7/431 (2%)
Strand=Plus/Plus
Query 736 TCA-AGCAAGTTACCAGCCTCACAGCTGCAATCGCCGGTGCAAAAGCAGCGGCGACACAA 794
||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TCAGAGCAAGTTACCAGTCTCACAGCTGCAATTGCCGGTGCAAAAGCAGCGGCGACACAA 660
Query 795 TTTTCTAAGAAGGGACAAAGTCTCCAAACAAATAATATATTTGATTACACAACAAGAAGC 854
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTTCAAAGAAGGGACAAAGTCTCCAAACAAATAATATATTTGATTACACAACAAGAAGC 720
Query 855 AAGAGCAAAGTTATTGAAGATGAAGCAGCAGAATCCCTAGATAACCCGGTTCTTGGTTCT 914
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 721 AAGAGCAAAGTTATTGAAGATGATGCATCAGAATCCCTGGATAACCCGGTTCTTGGTTCT 780
Query 915 GGTGGAACGTCTGACCGTACTTATAGAACAAGAAGCAAGAACAGAGGCACACAGATGGGT 974
|||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 781 GGTGGAACGTGTGACCATACTTATACAACAAGAAGCAAGAACAAAGGCACACAGATGGGT 840
Query 975 GAAGAAGTATGTAGTGAAAGCAGCAACAGCAGCAGCAAAGTTGAATCTAGTCAAAGAAGT 1034
||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||
Sbjct 841 GAAGAAGTATGTAGTGAAAGCAGCA---GCAGCAG-A--GTGGAATCTAGTCAAAGAAGT 894
Query 1035 GCAGTCACAAAGAGTGAGGACAGGAATACAAGAATTGGTGAAAGAAGGTTTGATCCTGGA 1094
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 895 GTAGTCACAAAGAGAGAGGACAGGAATACAAGTATTGGTGAAAGAAGGTTTGATCCTGGA 954
Query 1095 TCTGCCCGGATCATGGCCGCTGCAATTAGGAACTTGAAGCCACCTTCTTGATCTAATGCG 1154
||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 955 TCTGCCCGGATTATGGCCGCTGCAATTAGGAACTTGAAGCCACCGTCTTGATCTATTGTG 1014
Query 1155 TCAAGGTTGTA 1165
||||||||||
Sbjct 1015 ACAAGGTTGTA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5