BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20430.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343604 jgi|Araly1|343604|fgenesh1_pg.C_scaffold_3003367 998 0.0
> Ahg343604 jgi|Araly1|343604|fgenesh1_pg.C_scaffold_3003367
Length=627
Score = 998 bits (540), Expect = 0.0
Identities = 598/627 (95%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 432 ATGTCAAGCTCCAAGATGAAAAGCCTCTTGAAAGGGCTCCGATACATTTCTCAAGTATTT 491
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCAAGCTCCAAGATGAAAAGCCTCTTGAAAGGGCTCCGATATATTTCTCAAGTATTT 60
Query 492 GAAAGTGAAAAAGAAGAAGAAATACAAATCGGAAATCCAACGGACGTAAAACATGTTGCC 551
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 GAAAGTGAAAAAGAAGAAGAAATACAGATCGGAAATCCAACGGATGTAAAACATGTTGCC 120
Query 552 CATATCGGTTGGGATGGACCATCCGCTAATGCCACCGCACCAAGCTGGATGACTGAGTTC 611
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATATCGGTTGGGATGGACCATCCGCTAATGCCACCGCACCAAGCTGGATGACTGAGTTT 180
Query 612 AACTCCGGCGGGGGATTCGAATCTGCTGAAGGAGTCGGAGAAGATGATTCCTCCATAAAA 671
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 181 AACTCTGGCGGGGGATTCGAATCTGGTGAAGGAGGCGGAGAAGATGATTCCTCCATAAAA 240
Query 672 TGTATGTCGGAATATGGTGGTCGGTCTAGAGATTTGCCAAACCTACCAAAATCTACGAGG 731
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 241 TGTATGTCGGAATATGGTGGTCGGTCCAGAGATTTGCCAAATCTACCAAAATCTACGAGG 300
Query 732 AAAGCAGCGTCCGAGAAAGGTTCTCCGACAAAAGACAAATCATCAGACAAAACTAAACGT 791
||| | ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 301 AAATCGGCGTCGGAGAAAGGTTCTCCGACGAAAGAAAAATCATCAGACAAAACTAAACGC 360
Query 792 CGCTCTTCTAACAAAGGGACATCGTCATCGTCGAGGAGACCAAAGGAAGCCACTGAAGAA 851
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGGTCTTCGAACAAAGGCACATCGTCATCGTCGAGGAGACCAAAGGAAGCCACTGAAGAA 420
Query 852 CAAGACGAGTTGTCTTCTTGGCCTAGTGGATTACCGGAAATTCCAAAGAAATCTAGGAGG 911
||||||||||| |||||||||||| ||||| |||||||| ||||||||||||| ||||||
Sbjct 421 CAAGACGAGTTATCTTCTTGGCCTCGTGGAATACCGGAAGTTCCAAAGAAATCAAGGAGG 480
Query 912 AAGAAGAAGTCGACGAAAGAAACCGCGGTTAATGGAGGGTCATCAAGATCGACAAGAAGA 971
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGAAGAAGTCGACAAAAGAAACCGCGGTTAATGGAGGGTCATCAAGATCGACAAGAAGA 540
Query 972 TCTGATGTCGATAACATGTCGGAATATATGTCTGAGACTGGTTCTGTGAGATCTATGCCT 1031
|||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 541 TCTGATGTGGATAATATGTCGGAATTTATGTCTGAGACTGGTTCGGTGAGATCTATGCCT 600
Query 1032 CAATTCGACAATAGAGATGATTTTTGA 1058
|||||||||||||||||||| ||||||
Sbjct 601 CAATTCGACAATAGAGATGACTTTTGA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5