BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20440.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931910 jgi|Araly1|931910|scaffold_304367.1 2226 0.0
Ahg945175 jgi|Araly1|945175|scaffold_701404.1 1260 0.0
> Ahg931910 jgi|Araly1|931910|scaffold_304367.1
Length=1321
Score = 2226 bits (1205), Expect = 0.0
Identities = 1283/1321 (97%), Gaps = 3/1321 (0%)
Strand=Plus/Plus
Query 119 GAACAAGAAGAAGGAAGGTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGA 178
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAAGAAGAAGAA-GAAGGTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGA 61
Query 179 AGATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCCAGGACCCG 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 62 AGATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCAAGGACCCG 121
Query 239 TTTTAAATCAAGGGCTGGAAAGACTCTAAGTGCTAGAAGATGGCACGCTGCCTTTACTGA 298
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 122 TTTTAAATCAAGGGCTGGAAAGACTCTAAGTGCTAGAAGGTGGCATGCTGCGTTTACTGA 181
Query 299 AGATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCC 241
Query 359 TTCCATCAAAGGCGCTGTTTGGGAGTTTTTGTTAGGATGCTACGATCCAGACAGCACTTT 418
|| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 242 CTCGATCAAGGGCGCTGTTTGGGAGTTTTTGCTAGGGTGCTACGATCCAGACAGCACTTT 301
Query 419 TGAGGAAAGGAACATACTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGAGGAAAGGAACATTCTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 361
Query 479 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTACGTCACAATGGCAGTCGTTCA 538
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 362 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTATGTCACAATGGCAGTGGTTCA 421
Query 539 AGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAACCAAGGATGGATCGTGAAAAA 598
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 422 AGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAATCAAGGATGGATTGTGAAAAA 481
Query 599 CACT-GTTACAGATGAGAGAGTGCTACAATGGATGCTCTCACTACACCAGATCGGCCTTG 657
| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 482 -TGTCGTTACAGATGAGAGAGTGCTACAGTGGATGCTCTCGCTACACCAGATCGGCCTTG 540
Query 658 ATGTTGCTAGAACAGATCGGTATCTCTGTTTTTATGAGAATGATCGTAATCAATCAAAAC 717
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 ATGTTGCTAGAACAGATCGGTATCTCTGCTTTTATGAGAATGATCGTAATCAATCAAAAC 600
Query 718 TATGGGACGTTCTTGCCATATATACGTGGTTGAATCTTGATATTGGTTATGTTCAGGGAA 777
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 TGTGGGACGTTCTTGCCATATATACATGGTTGAATCTTGATATTGGTTATGTTCAGGGAA 660
Query 778 TGAATGATATATGTTCCCCAATGATAATCCTCTTTGATGATGAAGGCGACGCTTTCTGGT 837
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 TGAATGATATATGTTCCCCAATGATAATCCTCTTTGATGATGAAGCCGACGCTTTCTGGT 720
Query 838 GCTTTGAGCGGGCAATGCGGAGACTAAGAGAAAATTTCAGGGCAACAGCAACATCAATGG 897
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 721 GCTTTGAGCGTGCAATGCGAAGACTAAGGGAAAATTTCAGGGCAACAGCAACATCAATGG 780
Query 898 GTGTCCAGACTCAACTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCC 957
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTGTCCAGACTCAGCTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCC 840
Query 958 ATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTATTTGCTATTCGGATGCTGATGG 1017
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 ATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTGTTTGCTATTCGGATGCTGATGG 900
Query 1018 TACTTTTCAGGAGAGAATTCTCTTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGG 1077
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 901 TACTTTTCAGGAGAGAATTCTCCTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGG 960
Query 1078 CGATGGAGTACAATCCAACCATGTTTGCAACGTACGAGGAACTAGAAAACCGAAACAACG 1137
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 961 CGATGGAGTACAATCCAACCATGTTTGCAACATATGAGGAACTAGAAAACCGAAACAACG 1020
Query 1138 CAGCATCCGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAGCATCCGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACA 1080
Query 1198 GTGGGCAGAACGAGCAACATCGCAACACGCTTGCTGTTTTTGTGGTCGCAAGCGTTCTAC 1257
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1081 GTGGGCAGAACGAGCAACATCGCAATACGCTTGCTGTCTTTGTGGTCGCAAGCGTTCTAC 1140
Query 1258 AGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATAC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATAC 1200
Query 1318 TAGGAGACATTGCGGGTAATCTTGACGCCAAAAAAGCATGTAAAGAAGCGTTGAAGATCC 1377
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1201 TAGGAGACATTGCGGGTAATCTTGACGCGAAAAAAGCATGTAAAGAAGCGTTGAAGATCC 1260
Query 1378 ATGAAAAATTCCTGAAAAAGGCTAATAGTAATAAGCAATAAAGATTTGCTCAAAACTTCT 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1261 ATGAAAAATTCCTGAAAAAGGCTAATAGTAATAAGCAATAAAGATTTGCTCAAAACCTCT 1320
Query 1438 A 1438
|
Sbjct 1321 A 1321
> Ahg945175 jgi|Araly1|945175|scaffold_701404.1
Length=1315
Score = 1260 bits (682), Expect = 0.0
Identities = 1095/1295 (85%), Gaps = 25/1295 (2%)
Strand=Plus/Plus
Query 123 AAGAAGAAG-GAAG-GTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGAAG 180
||||| ||| |||| ||||||| |||| || ||||||||||||||||||||||| ||||
Sbjct 2 AAGAA-AAGTGAAGCTTTGAATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAG 60
Query 181 ATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCCAGGACCCGTT 240
|||||||||||||||||||||||||| | |||||| | |||||||||||||||| || |
Sbjct 61 ATTTGCAAGGTTTCTATCCAGTTAGATCAGAATGTGTAGCAGATGTTCCCAGGACTCGAT 120
Query 241 TTAAATCAAGGGCTGG-AAAGACTCTAAGTGCTAGAAGATGGCACGCTGCCTTTACTGAA 299
|||||||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 121 TTAAATCAAGGGCTGGTAAA-ACTCTAAGTGCTAGAAAATGGCACGCTGCGTTTACTGAA 179
Query 300 GATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCCT 359
||||| |||||||||||||||| ||| ||| | |||||||||| || |||||||||||
Sbjct 180 GATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCAAGGGGGAATTCATCCC 239
Query 360 TCCATCAAAGGCGCTGTTTGGGAGTTTTTGTTAGGATGCTACGATCCAGACAGCACTTTT 419
|| |||||||| | ||||||||||||||||||||| | |||||||| |||||||| |||
Sbjct 240 TCAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGGTTACGATCCGGACAGCACGTTT 299
Query 420 GAGGAAAGGAACATACT-GAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 478
|| ||| |||| | | | |||||||| ||||||||||||||| || |||||||||||
Sbjct 300 GAAGAACGGAATA-AGTTGAGGAATCACAGAAGGGAGCAGTATTATGGTTGGAAAGAAGA 358
Query 479 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTACGTCACAATGGCAGTCGTT-C 537
|||| ||| ||||||||| | ||||||| ||||||| ||||| |||||||| ||| |
Sbjct 359 ATGTCGGAATATGGTTCCTCTTGTTGGTAGCGGCAAGTTTGTCACGATGGCAGTTGTTGC 418
Query 538 AAGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAACCAAGGATGGATCGTGAAAA 597
| ||| ||||| | ||| |||| ||||| || ||||| | ||||||||| | |||||||
Sbjct 419 A-GAAGATGGGCAGCCATTAGAAGAATCCTCAGTAGAGGATCAAGGATGGCTTGTGAAAA 477
Query 598 ACACTGTTACAGATGAGAGAGTGCTACAATGGATGCTCTCACTACAC-CAGATCGGCCTT 656
| || | ||||| || | ||||| || |||||||| | || | || ||||| ||
Sbjct 478 CCGCTATAACAGACAAGCGTGTGCTCCAGTGGATGCT-TGTCTTGAGTCAAATCGGTCTC 536
Query 657 GATGTTGCTAGAACAGATCGGTATCTCTGTTTTTATGAGAATGATCGTAATCAATCAAAA 716
||||| | |||||| || ||||||||||| |||||||||| ||| |||||||| ||| |
Sbjct 537 GATGTGGTTAGAACGGACCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGA 596
Query 717 CTATGGGACGTTCTTGCCATATATACGTGGTTGAATCTTGATATTGGTTATGTTCAGGGA 776
|||||||| ||||| |||| ||||| ||||| |||| ||||||||| |||||||| |||
Sbjct 597 CTATGGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAAGGA 656
Query 777 ATGAATGATATATGTTCCCCAATGATAATCCT-CTTTGATGATGAAGGCGACGCTTTCTG 835
|||||||| ||||||||||| ||||||||||| ||| || ||||||| ||||||||||||
Sbjct 657 ATGAATGACATATGTTCCCCGATGATAATCCTACTT-GAAGATGAAGCCGACGCTTTCTG 715
Query 836 GTGCTTTGAGCGGGCAATGCGGAGACTAAGAGAAAATTTCAGGGCAACAGCAACATCAAT 895
|||||||||||| |||||||| ||||||||||||||||||||| |||| || ||||||||
Sbjct 716 GTGCTTTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACGGCGACATCAAT 775
Query 896 GGGTGTCCAGACTCAACTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCT 955
||| ||||||||||| |||||| ||||||||||||||||||| || || |||||||| ||
Sbjct 776 GGGCGTCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCT 835
Query 956 CCATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTATTTGCTATTCGGATGCTGAT 1015
||||| ||||| ||||||||||| ||||| |||||||| |||||||| || ||| ||||
Sbjct 836 ACATCAGCATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGAT 895
Query 1016 GGTACTT-TTCAGGAGAGAATTCTCTTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGT 1074
|||| || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 896 GGTA-TTGTTCAGGAGAGAGTTCTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGT 954
Query 1075 GGGCGATGGAGTACAATCCAACCATGTTTGCAACGTACGAGGAACTAGAAAACCGAAACA 1134
|||| |||||||||||||||| || ||||||| | ||||| |||| | | ||| |||||
Sbjct 955 GGGCTATGGAGTACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATAAACA 1014
Query 1135 ACGC---AGCATC-CGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATAC 1190
|| | || | | |||||| | |||||| || | |||||| |||||||| || |||||
Sbjct 1015 ACTCCTCAGGA-CACGATCCGAGGTTACTCAAGCAGTATGGAAAGTTTGAGAGAAAATAT 1073
Query 1191 ATAAACAGTGGGCAGAACGAGCAACATCGCAACACGCTTGCTGTTTTTGTGGTCGCAAGC 1250
||||| | ||| |||||||||||||| | |||||||||||||||||||| || ||||||
Sbjct 1074 ATAAAGAATGGCCAGAACGAGCAACA-C--AACACGCTTGCTGTTTTTGTTGTAGCAAGC 1130
Query 1251 GTTCTACAGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTT 1310
||||| | |||||||||||||||||||||||||| || |||||| |||| || ||||||
Sbjct 1131 GTTCTTGAAACAAAGAACAAACGTCTCTTGAAGGAAGCAAAAGGCCTAGATGACGTTGTT 1190
Query 1311 CAGATACTAGGAGACATTGCGGGTAATCTTG-ACGCCAAAAAAGCATGTAAAGAAGCGTT 1369
|||||| | || | ||||| |||||| ||| |||| | |||||||||||||||||| ||
Sbjct 1191 CAGATATTGGGCGGTATTGCAGGTAAT-TTGGACGCGAGAAAAGCATGTAAAGAAGCTTT 1249
Query 1370 GAAGATCCATGAAAAATTCCTGAAAAAGGCTAATA 1404
|||||| ||||||||||||||||| ||||||||||
Sbjct 1250 GAAGATTCATGAAAAATTCCTGAAGAAGGCTAATA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5