BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20450.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906855 jgi|Araly1|906855|Al_scaffold_0003_3983 688 0.0
Ahg492088 jgi|Araly1|492088|fgenesh2_kg.7__1521__AT4G27090.1 438 2e-122
> Ahg906855 jgi|Araly1|906855|Al_scaffold_0003_3983
Length=405
Score = 688 bits (372), Expect = 0.0
Identities = 394/405 (97%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 62 ATGGGTTTTAAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTACGGCGAGGAT 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTTTTAAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTACGGCGAAGAT 60
Query 122 TATGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTTGTGGATGCC 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTTGTGGATGCC 120
Query 182 CCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTTACTGACATCGTCATT 241
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 121 CCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTAACTGACATTGTGATT 180
Query 242 GATATCAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGATGTG 301
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GATATCAACAGAGTGCCCAAGAAGAAGCATTTGATTGAGGCAATGGAGAAGGCTGATGTG 240
Query 302 AAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCT 300
Query 362 GCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGAGGGCTGGTATT 421
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCACTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGAGGGCTGGTATT 360
Query 422 GTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCTGCTTGA 466
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 GTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGACCGCTGCTTGA 405
> Ahg492088 jgi|Araly1|492088|fgenesh2_kg.7__1521__AT4G27090.1
Length=665
Score = 438 bits (237), Expect = 2e-122
Identities = 359/418 (86%), Gaps = 8/418 (2%)
Strand=Plus/Plus
Query 54 CGGCCAAAATGGGTTTT-AAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTAC 112
|||| ||||| |||||| ||||| | ||| ||||| |||||||| || || || ||||||
Sbjct 60 CGGCGAAAAT-GGTTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTAC 118
Query 113 GGCGAGGATTATGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTT 172
|| || ||| ||||||||||||| ||||||||||| || || ||||| ||||| || ||
Sbjct 119 GGAGAAGATCATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGC-TTT 177
Query 173 -GTGGATGCCCCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTTACTGA 231
||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 178 GGTGGACGCCCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGA 237
Query 232 CATCGTCATTGATATCAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAA 291
||||| ||||| |||||| |||| || |||||||||| |||||| ||||||||||||||
Sbjct 238 TATCGTGATTGACATCAACCGAGTGCCAAAGAAGAAGGCTTTGATCGAGGCAATGGAGAA 297
Query 292 GGCTGATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAA 351
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 298 GGCTGATGTGAAGAACAAGTGGGAGAAGAGCTCATGGGGTAGGAAGCTTATTGTGCAGAA 357
Query 352 GA-GAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGA 410
| | || || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 -ACGTAGGGCCAACCTCAATGATTTTGATAGGTTCAAGATCATGTTGGCCAAAATCAAGA 416
Query 411 GGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAA-AAGGGAGATCGCTGCTTGAT 467
|||||| |||| ||||| |||||||| || || || |||| ||||| |||| ||||
Sbjct 417 AAGCTGGTGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGG-AGATCACTGCCTGAT 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5