BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20463.1
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906858 jgi|Araly1|906858|Al_scaffold_0003_3986 263 5e-70
> Ahg906858 jgi|Araly1|906858|Al_scaffold_0003_3986
Length=279
Score = 263 bits (142), Expect = 5e-70
Identities = 236/280 (84%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 1 ATGGGATTTTCCCCAAAAACTTTAGTCGCATTTTGTTGGACTGTTCTCTTCATCATATCT 60
|||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 1 ATGGGATTTTCCCCCAAAACTTTAGTGGCATTTTGTTTTACTGTCCTCTTCATCATATCT 60
Query 61 TTTGTTCATTGTCTTCCTATGACTCATGGTGGGAAA-CCGGGTTATGGAATAGAGCGAAC 119
||||||||||||||||||||||||| || ||| || |||||| |||||| | ||| ||
Sbjct 61 TTTGTTCATTGTCTTCCTATGACTCCTGATGG-AAGTCCGGGTAATGGAAGAAAGCTAA- 118
Query 120 AATTATTCGTCCGGAATGGAGATGCTACGTGGATGAAGGGTGTCCTAAGGGACAGGGAGC 179
|| ||||||||||||||||||||||| |||||| ||||||| ||||||||| | |||
Sbjct 119 --TTCCTCGTCCGGAATGGAGATGCTACGAGGATGATGGGTGTCGTAAGGGACAAGTAGC 176
Query 180 ACCCTGCGaaaaaaaTTGTAAA--AATGTAGC-TGA-TTACGGCATTTGTATTGGAATCA 235
| |||||| |||||||| ||| ||| | | ||||||||||||||||||| |||
Sbjct 177 AGGCTGCGATCGTTATTGTAAAGGAATA-AGCATTACTTACGGCATTTGTATTGGAGTCA 235
Query 236 AATGTTGTTGTTTTGATGTTATACCTGTTCCTCCTACCTA 275
||||||||||||||| |||| |||| |||||||| ||||
Sbjct 236 GATGTTGTTGTTTTGAAGTTACACCTATTCCTCCT-CCTA 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9615208428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5