BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20480.1

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906860 jgi|Araly1|906860|Al_scaffold_0003_3988                    322    1e-87


> Ahg906860 jgi|Araly1|906860|Al_scaffold_0003_3988
Length=192

 Score =  322 bits (174),  Expect = 1e-87
 Identities = 186/192 (97%), Gaps = 0/192 (0%)
 Strand=Plus/Plus

Query  38   ATGAAGAAATCTACAGAGACTCCGGCGAGACCGAACGCAACTGTTAAAACTCAGAAACCT  97
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  1    ATGAAGAAATCTACAGAGACTCCGGCGAGATCGAACGCAACTGTTAAATCTCAGAAACCT  60

Query  98   CCTTTCAGACCTGCCGTTGATGACACCAAACCTGTTCTTCAGGACCCTATTCTGAGATCG  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCTTTCAGACCTGCCGTTGATGACACCAAACCTGTTCTTCAGGACCCTATTCTGAGATCG  120

Query  158  GATCCAATGGAGACAGAAGAAGCTGTGCTGAGATTGCCTTCTTTCCCAATGATCAGACCA  217
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct  121  GATCCAATGGAGACAGAAGAAGCTGTGCTGAGATTGCCTCCTTTCCCAGTGATAAAACCA  180

Query  218  TCTGAATCGTAG  229
            ||||||||||||
Sbjct  181  TCTGAATCGTAG  192



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13545234095


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5