BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20490.1

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480876 jgi|Araly1|480876|fgenesh2_kg.3__3577__AT2G20490.1         508    1e-143


> Ahg480876 jgi|Araly1|480876|fgenesh2_kg.3__3577__AT2G20490.1
Length=419

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 394/446 (88%), Gaps = 29/446 (7%)
 Strand=Plus/Plus

Query  1    CTGCTACTTCTGCTCCAGAAAAACCCTAATCAGCTTCTCGTCTCC-ATAAATTCAGAACC  59
            ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct  1    CTGCTTCTTCTGCTCCAGAAAAACCCTAATCAGCTTCTCGTCTCCAAAAAATTCAAAACC  60

Query  60   AAGAAACATCTCTGAGAGACTAAACGAAGATGTATCTTCAGTGCTATATCAACGAGAAGG  119
            |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAGAAACATCTCTGAGGGACTCAACGAAGATGTATCTTCAGTGCTATATCAACGAGAAGG  120

Query  120  GTGAGAAGGTTTACACAACTAAGAAGGAATCACCGCTAGGGCTAGCCACTGAATCTGCCC  179
            |||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct  121  GTGACAAGGTTTACACCACTAAGAAGGAATCACCGCAAGGTCTAGCCACTGAATCTGCAC  180

Query  180  ATCCAGCCCGGTTCTCCCCTGACGATAAATACTCAAAGCAGAGAGTATTGTTGAAGAAGC  239
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  181  ATCCAGCCCGGTTCTCCCCTGATGATAAATACTCAAAGCAGAGAGTATTGTTGAAGAAGC  240

Query  240  GATTTGGTCTCTTACCGACCCAAAACGCACCTCTCCAGTACTGATGAAGAAGCAAACCAC  299
            |||||||||||||||||||||| ||||||||| || ||||||||||||            
Sbjct  241  GATTTGGTCTCTTACCGACCCAGAACGCACCTGTCAAGTACTGATGAA------------  288

Query  300  TTGCCTGTGTTGGTTTTTGATGTTCCTTTTTAATTTGCTATGTTGTCTCTTAATGAAATG  359
            ||   | || |  ||| |  | ||  ||   |||||||||||||||||||||||||||||
Sbjct  289  TT---T-TGAT--TTTCT--T-TT--TT---AATTTGCTATGTTGTCTCTTAATGAAATG  334

Query  360  TTGACTTGAACCGTCTTTGTAATGTCTTCAAATAGTGTGAGTTAAGAGCAATTTTTACCT  419
            |  || | |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  335  TCAACGTAAACCTTCTTTGTAATGTCTTCAAATAGTATGAGTTAAGAGCAATTTTTACCT  394

Query  420  AT-CGTCGTCAAGCCTGCCACTTAAA  444
            || | |||||||||||| ||||||||
Sbjct  395  ATAC-TCGTCAAGCCTGACACTTAAA  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17246326228


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5