BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20495.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480877 jgi|Araly1|480877|fgenesh2_kg.3__3578__AT2G20495.1 1264 0.0
> Ahg480877 jgi|Araly1|480877|fgenesh2_kg.3__3578__AT2G20495.1
Length=902
Score = 1264 bits (684), Expect = 0.0
Identities = 849/924 (92%), Gaps = 29/924 (3%)
Strand=Plus/Plus
Query 3 aaagaaaaacaaaatgaagaaaagaacaaaTCCGGAATCGTCCACCTCTGAAGCAAAGAA 62
||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 1 AAAGAAAAAAAAAATGAAGAAAAGAAAAAATCCGGAATCGTCCGCCTCTAAAGCAAAGAA 60
Query 63 ACGCCGGCGAGA-G--GAAGATGACGATA-AAGTTGGTTGTAGTCACTCTGCAATTGAAG 118
|||||||||||| | |||||||| || | |||| |||||||||||| |||||| |
Sbjct 61 ACGCCGGCGAGAGGAAGAAGATGAAGA-AGAAGTGGGTTGTAGTCACACTGCAA-T---- 114
Query 119 ATGGAGCAGTATCTGAGGATCAATGTCTTCCTCTTGAGGATGATCTCACCTTTAGCGATA 178
| | | | ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 115 -T------G-A----A-GATCAATGTCTTCCTCTGGAGGATGATCTCACCTTTAGCGACA 161
Query 179 CTTCTGTTGCCCTT-CGAATGATGCGAGCTCAGTTTCCTCGTATTGACCAGGCTTCGATC 237
|||||| || | || ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 162 CTTCTG-TGGCATTACGAATGATGAGAGCTCAGTTTCCTCGTATTGATCAGGCTTCGATC 220
Query 238 CCACCCTTCATATTACAGTCGCAATTGTACAGTAGTGTCAATGATAGAACCCAAGTCGAT 297
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 221 CCACCCTTCATATTACAGTCGCAGTTATACAGTAGCGTCAATGATAGAACCCAAGTCGAT 280
Query 298 AGAGAATTAGAGTGTTTACGAAGGGAGAAAGTTGTTCGTGTTTTCAAACTCAACACTGGA 357
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AGAGAATTAGAGTGTTTAAGAAGGGAGAAAGTTGTTCGTGTTTTCAAACTCAACACTGGA 340
Query 358 CAAGATGATCATGCCATCATCTTTTTGGATGACTATCTTAACCAGGTAGATCGAATAGTG 417
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CAAGATGATCATGCAATTATCTTTTTGGATGACTATCTTAACCAGGTAGATCGAATAGTG 400
Query 418 AAGAGGATGGAAGAGAAGAAACAGAGTGATCTTGAAATTTTCAAGTTGTTCAAAATGCAT 477
||||||||||||||||||| |||||||||||||||| |||| |||| ||||||| ||||
Sbjct 401 AAGAGGATGGAAGAGAAGAGACAGAGTGATCTTGAAGTTTTTAAGTGGTTCAAAGGGCAT 460
Query 478 GTCCTTGATTCAAAACTTGAACCTAGTATCGGGCATCATGAGCTACTTTCGCTGTTGTCA 537
||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||
Sbjct 461 GTCCTTGATTCAAAACTTGAACCCAGTATTGGACATCATGAGCTATTTTCGCTGTTGTCA 520
Query 538 TTGGGAGGAAAGGTGAAAGATGCACACATCACTCTCTTAATAAACGCAGGCCTTCTCACA 597
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 521 TTGGGCGGAAAGGTGAAAGATGCACACATCACTCTCTTAATTAACGCAGGCCTTCTCACA 580
Query 598 CGCCAACTTATCGATCCAGACATGTACTGGTTTGCAATTCCGAGTACCGGTAAATTGTGG 657
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 581 CGCCAACTTATCGATCCAGACATGTACTGGTTTGCAATTCCAAGTATCGGTAAACTGTGG 640
Query 658 AAGGGTCTATCGCAGGGAAGGAACGAACTCCTCTCATTGATAAAGCGCAAGCGACATAAA 717
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 641 AAGGGTCTATTGCAGGGAAGGAACGAACTCCTCTCATTGTTAAAGCGCAAGCGACATAAA 700
Query 718 GAGATGTTCTTGGCTGAGCTTGAAAAGAAACGGCTCCGGTTCTCTCCTCTGGATGTGAGA 777
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GAGATGTTCTTGGCAGAGCTTGAAAAGAAACGGCTCCGGTTCTCTCCTCTGGATGTGAGA 760
Query 778 TTTCACGTACGTGATCTCATTGGCTCCGGTCACCTGAAAACTGTTCAGACAACTTCTGGA 837
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TTTCACATACGTGATCTCATTGGCTCCGGTCACCTGAAAACTGTTCAGACAACTTCTGGG 820
Query 838 CTGATCGTTCGGATTTTAAAGGACTAAAATGC-AGGTGCAGGTTTCTCATCAAACGGGTA 896
|||||||||||||||| ||||||||||||||| || ||| |||||||||||||| ||| |
Sbjct 821 CTGATCGTTCGGATTTCAAAGGACTAAAATGCCAG-TGCGGGTTTCTCATCAAATGGGCA 879
Query 897 ATTTCAT-ATTCAAGAGACCTTTT 919
|||| || || || | ||||||||
Sbjct 880 ATTTAATTAT-CAGGTGACCTTTT 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5