BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20495.1 Length=1093 Score E Sequences producing significant alignments: (Bits) Value Ahg480877 jgi|Araly1|480877|fgenesh2_kg.3__3578__AT2G20495.1 1264 0.0 > Ahg480877 jgi|Araly1|480877|fgenesh2_kg.3__3578__AT2G20495.1 Length=902 Score = 1264 bits (684), Expect = 0.0 Identities = 849/924 (92%), Gaps = 29/924 (3%) Strand=Plus/Plus Query 3 aaagaaaaacaaaatgaagaaaagaacaaaTCCGGAATCGTCCACCTCTGAAGCAAAGAA 62 ||||||||| |||||||||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 1 AAAGAAAAAAAAAATGAAGAAAAGAAAAAATCCGGAATCGTCCGCCTCTAAAGCAAAGAA 60 Query 63 ACGCCGGCGAGA-G--GAAGATGACGATA-AAGTTGGTTGTAGTCACTCTGCAATTGAAG 118 |||||||||||| | |||||||| || | |||| |||||||||||| |||||| | Sbjct 61 ACGCCGGCGAGAGGAAGAAGATGAAGA-AGAAGTGGGTTGTAGTCACACTGCAA-T---- 114 Query 119 ATGGAGCAGTATCTGAGGATCAATGTCTTCCTCTTGAGGATGATCTCACCTTTAGCGATA 178 | | | | ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 115 -T------G-A----A-GATCAATGTCTTCCTCTGGAGGATGATCTCACCTTTAGCGACA 161 Query 179 CTTCTGTTGCCCTT-CGAATGATGCGAGCTCAGTTTCCTCGTATTGACCAGGCTTCGATC 237 |||||| || | || ||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 162 CTTCTG-TGGCATTACGAATGATGAGAGCTCAGTTTCCTCGTATTGATCAGGCTTCGATC 220 Query 238 CCACCCTTCATATTACAGTCGCAATTGTACAGTAGTGTCAATGATAGAACCCAAGTCGAT 297 ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 221 CCACCCTTCATATTACAGTCGCAGTTATACAGTAGCGTCAATGATAGAACCCAAGTCGAT 280 Query 298 AGAGAATTAGAGTGTTTACGAAGGGAGAAAGTTGTTCGTGTTTTCAAACTCAACACTGGA 357 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 281 AGAGAATTAGAGTGTTTAAGAAGGGAGAAAGTTGTTCGTGTTTTCAAACTCAACACTGGA 340 Query 358 CAAGATGATCATGCCATCATCTTTTTGGATGACTATCTTAACCAGGTAGATCGAATAGTG 417 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 341 CAAGATGATCATGCAATTATCTTTTTGGATGACTATCTTAACCAGGTAGATCGAATAGTG 400 Query 418 AAGAGGATGGAAGAGAAGAAACAGAGTGATCTTGAAATTTTCAAGTTGTTCAAAATGCAT 477 ||||||||||||||||||| |||||||||||||||| |||| |||| ||||||| |||| Sbjct 401 AAGAGGATGGAAGAGAAGAGACAGAGTGATCTTGAAGTTTTTAAGTGGTTCAAAGGGCAT 460 Query 478 GTCCTTGATTCAAAACTTGAACCTAGTATCGGGCATCATGAGCTACTTTCGCTGTTGTCA 537 ||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||| Sbjct 461 GTCCTTGATTCAAAACTTGAACCCAGTATTGGACATCATGAGCTATTTTCGCTGTTGTCA 520 Query 538 TTGGGAGGAAAGGTGAAAGATGCACACATCACTCTCTTAATAAACGCAGGCCTTCTCACA 597 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 521 TTGGGCGGAAAGGTGAAAGATGCACACATCACTCTCTTAATTAACGCAGGCCTTCTCACA 580 Query 598 CGCCAACTTATCGATCCAGACATGTACTGGTTTGCAATTCCGAGTACCGGTAAATTGTGG 657 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| Sbjct 581 CGCCAACTTATCGATCCAGACATGTACTGGTTTGCAATTCCAAGTATCGGTAAACTGTGG 640 Query 658 AAGGGTCTATCGCAGGGAAGGAACGAACTCCTCTCATTGATAAAGCGCAAGCGACATAAA 717 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 641 AAGGGTCTATTGCAGGGAAGGAACGAACTCCTCTCATTGTTAAAGCGCAAGCGACATAAA 700 Query 718 GAGATGTTCTTGGCTGAGCTTGAAAAGAAACGGCTCCGGTTCTCTCCTCTGGATGTGAGA 777 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 701 GAGATGTTCTTGGCAGAGCTTGAAAAGAAACGGCTCCGGTTCTCTCCTCTGGATGTGAGA 760 Query 778 TTTCACGTACGTGATCTCATTGGCTCCGGTCACCTGAAAACTGTTCAGACAACTTCTGGA 837 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 761 TTTCACATACGTGATCTCATTGGCTCCGGTCACCTGAAAACTGTTCAGACAACTTCTGGG 820 Query 838 CTGATCGTTCGGATTTTAAAGGACTAAAATGC-AGGTGCAGGTTTCTCATCAAACGGGTA 896 |||||||||||||||| ||||||||||||||| || ||| |||||||||||||| ||| | Sbjct 821 CTGATCGTTCGGATTTCAAAGGACTAAAATGCCAG-TGCGGGTTTCTCATCAAATGGGCA 879 Query 897 ATTTCAT-ATTCAAGAGACCTTTT 919 |||| || || || | |||||||| Sbjct 880 ATTTAATTAT-CAGGTGACCTTTT 902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40715275356 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5