BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20500.1

Length=925
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931920 jgi|Araly1|931920|scaffold_304377.1                        643    0.0  


> Ahg931920 jgi|Araly1|931920|scaffold_304377.1
Length=451

 Score =  643 bits (348),  Expect = 0.0
 Identities = 419/453 (92%), Gaps = 6/453 (1%)
 Strand=Plus/Plus

Query  315  TCTCAACAATCTTAAGAGTCATGTCTTGCCTTAGAATTAGGCTTTTACCTGCCAAAAGAG  374
            ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  1    TCTCAACAATCTTAAGAGTCATGTCTTGCCTGAGAATTAGGCTTTTACCTGCTAAAAGAG  60

Query  375  CTTGGAAAAGCTTCACCGCCAGCTTCCATAAACTCCGGGGATCCAAAACCAAACACCACA  434
            ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct  61   CTTGGAAAAGCTTCACCACCAGCTTCCATAAACTCCGGAGATCCAAAACTAAACACCACA  120

Query  435  CCAAGTACAAAGCATCAACTTCGGACAAACATTTCCTTCGTTCAAGCCAC-CGATCCA-G  492
            |||||||||  ||| |||||||||||||||||||| |||||||||||||| | ||||| |
Sbjct  121  CCAAGTACAGTGCAGCAACTTCGGACAAACATTTCTTTCGTTCAAGCCACAC-ATCCAGG  179

Query  493  AGAGAATG-TTCGAGACAGAGATTCCCGTGtttttttCATCCGCCTGAAGAGAGGTTGTT  551
            | |||| | ||||||||||||||||| |||||||||| | ||| || |||||||||||||
Sbjct  180  A-AGAA-GCTTCGAGACAGAGATTCCTGTGTTTTTTTTACCCGTCTAAAGAGAGGTTGTT  237

Query  552  TGTTCAAGAAGAAACGCAAAGATGTTGTATATGTGGATAAGCTCTTCAGGGAGCCTGTAG  611
            ||||||||||||||||||||| |||||| || || ||||||||||||||||| ||| | |
Sbjct  238  TGTTCAAGAAGAAACGCAAAGCTGTTGTCTACGTTGATAAGCTCTTCAGGGAACCTATGG  297

Query  612  CTGTGTCCAATTGGATTCCAGCAAAGCAATGGAAACCGAAGGAAGAATTGTTTCCGGAGA  671
            |||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct  298  CTGTATCCAATTGGATTCCAGCAAAGCAGTGGAAGCCGAAGGAGGAATTGTTTCCGGAGA  357

Query  672  AGGGAATAGACGAAAGAGCTGAAGAGTTCATCACTAGAGTCAAAGCAGAGATTCTCGCTT  731
            ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct  358  AGGGAATAGACGAAAGAGCCGAAGAGTTCATCACTAGAGTGAAAGCAGAGATTCTCGCTT  417

Query  732  CACGCAACTTGTAGTACCCATCATCAACACAAT  764
            ||||||||||||||||||||| |||||||||||
Sbjct  418  CACGCAACTTGTAGTACCCATAATCAACACAAT  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34310625300


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5