BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20510.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480879 jgi|Araly1|480879|fgenesh2_kg.3__3580__AT2G20510.1 2152 0.0
Ahg482583 jgi|Araly1|482583|fgenesh2_kg.4__1643__AT2G36070.1 1471 0.0
> Ahg480879 jgi|Araly1|480879|fgenesh2_kg.3__3580__AT2G20510.1
Length=1434
Score = 2152 bits (1165), Expect = 0.0
Identities = 1351/1438 (94%), Gaps = 23/1438 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTACGTCAA 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTACGTCAA 60
Query 61 CTATTCCACCAACGA------AGAGCAAACGCAAGATCAGAGTTTCTTCCTGCTATTGGG 114
||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 61 CTATTCCACCAACGAGTTCTGAGAGGAAACGCAAGATCAGAGTTTCTTCCCGCTATTGGG 120
Query 115 TATACGAGTCATCGCCGGTTCAGCGTTTTCACCGAGTTCTCGAAGAATATTAGAGGAGAA 174
||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 121 TATTCGAGTCATCGCCGGTTCAGTGTTTTCAGCGAGTTCTCGAAGAATATTAGAGGAGAA 180
Query 175 GCTCATAGCAATCCTGAATTTGAAAGAACAGTAAAGGAGCTCAAGGAAAGAACAGAAGAG 234
||| ||||||||||||||||| |||||||||| |||||| | ||||||||| ||||||||
Sbjct 181 GCTGATAGCAATCCTGAATTTCAAAGAACAGTGAAGGAGTTTAAGGAAAGAGCAGAAGAG 240
Query 235 TTTAAAGGTGTAACAGAGGACCTGAAAGTGAGAACGAAACAAACGACTGAAAAGCTTTAC 294
||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 241 TTTAAAGGTGTAAAAGAGGACCTGAAAGTTAGAACGAAACAAACGACTGATCAGCTGTAC 300
Query 295 AAGCAAGCTGATGGTGTGTGGACTGAGGCTGAATCTGCGGCC-AAAAAGGTCTCTTCAAG 353
||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 301 AAGCAAGTTGATGGTGTGTGGACTGAGGCTGAATCTGC-GCCGAAAAAGGTCTCTTCTAG 359
Query 354 TGTGAAAGACAAGCTCTCAGCAGCCAGTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAA 413
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 TGTGAAAGACAAGCTCTCAGCAGCCACTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAA 419
Query 414 GGAGGAGAATGCAGAGTCAGCGAGTTCATCAGGCACAAGAGCCTCTCAAGGAG---AA-A 469
|||||||| |||||||||||| |||||||||||||||||| |||||||||||| || |
Sbjct 420 GGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAAGAACCTCTCAAGGAGAAAAACA 479
Query 470 --A--A-CAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTC 524
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCAGCATCAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTC 539
Query 525 AAGTCTTTCTTCACCAAAGGTATCCGAGGTGTTTTACAGGCTGAAGGAAGCCAAACCCTT 584
|||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 540 AAGTCTTTCTTCGCCAAAGGTATCCGAGGCGTTTTACAAGCTGAAGGAAGCCAAACCCTT 599
Query 585 TGATATAGTAAAGCAA-GCACTTGACATTGTGAAGGATGAGTTACGTGGGAACCCATCTA 643
||| ||||||||| || ||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 600 TGACATAGTAAAG-AAGGCACTTGACATTGTGAAAGATGAGTTGCGTGGAAACCCATCAA 658
Query 644 GAAAAAAGTTCCTGGAACATACACCTCCCCCGCCATTCACCGGTGAGAGAAGTATGAGAA 703
|||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 GAAAGAAGTTCCTGGAATATACACCTCCCCCGCCATTCACAGGTGAGAGAAGTATGAGAA 718
Query 704 CAGAGATGGTGGTTACGCAAACAAAACAGTCTAAGTTGCAACAAAAGTGGGAATCCTTTA 763
| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 719 CGGAGATGGTTGTTACGCCAACAAAACAGTCTAAGTGGCAACAAAAGTGGGAATCCTTTA 778
Query 764 GAGAAAAGATGCAAGGTTCTCCTGTATTTAAACGTCTAAGC-GGAATGAGTGAGCCTGTT 822
||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 779 AAGAAAAGATGCAAGGCTCTCCTGTATTCAAACGTCTAAGCAGG-ATGAGTGAGCCTGTT 837
Query 823 GTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAAT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAAT 897
Query 883 CCAATTGTTCACAAGATTCAGGACATGAATGAGAAGTTCTTGAAGGAAACAGATTCTGCA 942
|| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 898 CCGATTGTTCACAAGATTCAGGATATGAATGAGATGTTCTTGAAGGAAACAGATTCTGCA 957
Query 943 TCAACTTACAAAGAGATACGCAGCCGAGACCCATCGTTCTCCTTGCCAGACTTTGCTGCA 1002
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 958 TCAACTTACAAAGAGATACGCAACCGAGATCCATCGTTCTCCTTGCCAGACTTTGCTGCA 1017
Query 1003 GAAATTGAGGAAGTCATCAAACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACC 1062
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAAATTGAGGAAGTCATCAGACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACC 1077
Query 1063 TTGAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACGGCAGAGCGCACAGCTTAC 1122
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1078 TTGAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACCGCAGAACTCACAGCTTAC 1137
Query 1123 CAAACTCATGGTGTCCTTTTCGATAACAAGCTTCTGCATATATCTGAAGTCTC-AGTTTC 1181
|||||||||||| || ||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1138 CAAACTCATGGTTTCTTTTTCGATAACAAGCTTCTGCATATATCTGACGT-TCGAGTTTC 1196
Query 1182 TGTGACAAAGATGATGGGAGATTCCCCAATAATCATCGCTAAGTTCCAAACGCAAGAAAT 1241
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 AGTGACAAAGATGATGGGAGATTCCCCAATAATCATCGCCAAGTTCCAAACGCAAGAAAT 1256
Query 1242 CTACTGCGTTCGTGACGAGAATGGAGAAATCCAAGAAGGTGGGCAGGACACGATACACAC 1301
||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1257 CTACTGCGTGCGCGACGAGAATGGAGAAATCCAAGAAGGAGGCCAGGACACGATACACAC 1316
Query 1302 GGTGTACCATGAATGGGCAATGCAACAAGTGGAGACAACAGAATTAGGGGAAGATGCTAT 1361
||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1317 GGTGTACCACGAATGGGCAATGCAACAAGTGGAGGCAACAGAGTTTGGGGAAGATGCTAT 1376
Query 1362 TTATCCCATTTGGAGGCTCAGAGAGATGTGTAGAAATGGTGTTCAAGCTCTCATTTAA 1419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1377 TTATCCCATTTGGAGGCTCAGAGAGATGCGTAGAAATGGTGTTCAAGCTCTCATTTAA 1434
> Ahg482583 jgi|Araly1|482583|fgenesh2_kg.4__1643__AT2G36070.1
Length=1872
Score = 1471 bits (796), Expect = 0.0
Identities = 1235/1441 (86%), Gaps = 53/1441 (4%)
Strand=Plus/Plus
Query 1 ATGGCGATTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTAC-GTCA 59
||||||| ||||||| | |||||||||||||||||||||||||||||||||| | | ||
Sbjct 219 ATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTTTCCAG-CA 277
Query 60 ACTATTCCACCAACGAAGAGCAAACGCAAGATC-AGAGTTTCT-TCCTGCTATTGGGTAT 117
| | | |||||||| |||| ||||||| | || | |||| | | | | |||||||
Sbjct 278 ATTGGTGCACCAACGGAGAGTGGGCGCAAGA-CTAGGGCTTCTGT-CGGGAAATGGGTAT 335
Query 118 ACGAGTCATCGCCGGTTCAGCGTTTTCACCGAGTTCTCGAAGAATATTAGAGGAGAAGCT 177
|||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||
Sbjct 336 GCGAGTCATCGCCGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAAATTAGAGGAGAAGCT 395
Query 178 CATAGCAATCCTGAATTTGAAAGAACAGTAAAGGAGCTCAAGGAAAGAACAGAAGAGTTT 237
||||||||||||||||| ||| |||||| |||||| ||||||||||| ||| ||||||
Sbjct 396 GATAGCAATCCTGAATTTCAAAAAACAGTCAAGGAGTTCAAGGAAAGAGCAGGAGAGTTG 455
Query 238 AAAGGTGTAACAGAGGACCTGAAAG-TGAGAACGAAACAAACGACTGAAAAGCTTTACAA 296
|||| | | | ||||||| |||||| | |||||||||||||| ||||| |||| || ||
Sbjct 456 AAAGATATTAGAGAGGACTTGAAAGCT-AGAACGAAACAAACTACTGAGCAGCTGTATAA 514
Query 297 GCAAGCTGATGGTGTGTGGACTGAGGCTGAATCTGCGGCCAAAAAGGTCTCTTCAAGTGT 356
||||| | |||| || ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 515 GCAAGGTCATGGAGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAAGTGT 574
Query 357 GAAAGACAAGCTCTCAGCAGCCAGTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAAGGA 416
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 575 GAAAGACAAGTTCTCAGCAGCCACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGAAAGGA 634
Query 417 GGAGAATGCAGAGTCAGCGAGTTCATCAGGCACAAGAGCCTCTCAAGGAG--AAA-A--A 471
|||||||||||||||||| || |||||||||||| || || || |||||| ||| | |
Sbjct 635 GGAGAATGCAGAGTCAGCAAGCTCATCAGGCACAGGAACCACTGAAGGAGAAAAACAGCA 694
Query 472 -CAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTCAAGTC- 529
|||||||| ||| |||||||||| | | |||||||||||| ||||||||||||||| |
Sbjct 695 GCAGCAATCTGGTACTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCAAG-CA 753
Query 530 TTTCTTCACCAAAGGTATCCGAGGTGTTTTACAGGCTGAAGGAAGCCAAACCCTTTGA-T 588
||||||||||||| ||||||||| | ||| || | ||| | | | |||| |
Sbjct 754 TTTCTTCACCAAAAATATCCGAGGCG-TTT-CA--C------AAG-C---CTC-TTGACT 798
Query 589 ATAGTAAAGCAA-GCACTTGACATTGTGAAGGATGAGTTACGTGGGAACCCATCTAGAAA 647
| | |||| || | |||||||||||| ||||| || || ||||| |||||||||| |||
Sbjct 799 -TTGCAAAG-AAGGGACTTGACATTGTAAAGGAGGAATTGCGTGGAAACCCATCTA-AAA 855
Query 648 -AAAGTTCCTGGAACATACACCTCCCCCGCCATTCACCGGTGAGAGAAGTATGAGAACAG 706
||| |||||| |||||||||| |||||||| || ||||||||||||| ||||| |
Sbjct 856 GGAAGCACCTGGAGTATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACAAGAACGG 915
Query 707 AGATGGTGGTTACGCAAACAAAACAGTCTAAGTTGCAACAAAAGTGGGAATCCTTTAGAG 766
|||| ||| |||||| ||||||||||||||||| |||| |||| ||||||||||| ||||
Sbjct 916 AGATAGTGATTACGCCAACAAAACAGTCTAAGTGGCAAAAAAAATGGGAATCCTTAAGAG 975
Query 767 AAAAGATGCAAGGTTCTCCTGTATTTAAACGTCTAAGCGGAATGAGTGAGCCTGTTGTCA 826
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 976 AAAAGATGCAAGGTTATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCTGTTGTTA 1035
Query 827 ACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAATCCAA 886
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1036 ACAAGAGCCAAGAGATTGCAGAAGATGTGATGGAAAAATGGGAAACCAGTGATAATCCGA 1095
Query 887 TTGTTCACAAGATTCAGGACATGAATGAGAAGTTCTT-GAAGGAAACAGATTCTGCATCA 945
|||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||
Sbjct 1096 TTGTTCACAAGATTCAGGACATGAATGAGAAGATCTTTGA-GGAAACAGGTTCTGCATCG 1154
Query 946 ACTTACAAAGAGATACG-CAGCCGAGACCCATCGTTCTCCTTGCCAGACTTTGCTGCAGA 1004
||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||| |||
Sbjct 1155 ACTTACAAAGAGATACGTC-GCCGAGATCCATCATTCTCCTTGCCGGACTTTGCTGTAGA 1213
Query 1005 AATTGAGGAAGTCATCAAACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACCTT 1064
|||| |||||| ||||| |||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 1214 AATTCAGGAAGCCATCAGACCAGTCTTGAATGCATATAGTAAGGGAGATGCTGAGACCTT 1273
Query 1065 GAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACGGCAGAGCGCACAGCTTACCA 1124
|||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||
Sbjct 1274 GAAGAAGTATTGCAGCAAGGAATTGATTGAACGGTGCACGGCAGAGCACAGAGCTTTCCA 1333
Query 1125 AACTCATGG-TGTCCTTTTCGATAACAAGCTTCTGCATATATCTGAAGTCTCAGTTTCT- 1182
| |||||| | | |||||||| |||||||||||||| |||||||||| | | ||
Sbjct 1334 GAGTCATGGCTATT-TTTTCGATCACAAGCTTCTGCATGTATCTGAAGT-TGAAATTAAA 1391
Query 1183 GTGACAAAGATGATGGGAGA-TTCCCCAATAATCATCGCTAAG-TTCCAAACGCAAGAAA 1240
| |||||||||||||||| | ||| ||| |||||||| | || ||||||||||||||||
Sbjct 1392 GAGACAAAGATGATGGGA-ACTTCTCCAGTAATCATCA-TCAGGTTCCAAACGCAAGAAA 1449
Query 1241 TCTACTGCGTTCGTGACGAGAATGGAGAA-ATCCAAGAAGGTGGGCAGGACACGATACAC 1299
||| ||||||||| ||| |||||||| || ||| ||||||| || |||||||||||||||
Sbjct 1450 TCTTCTGCGTTCGCGACCAGAATGGA-AACATCAAAGAAGGAGGCCAGGACACGATACAC 1508
Query 1300 ACGGTGTACCATGAATGGGCAATGCAACAAGTGGAGACAACAGAATTAGGGGAAGATGCT 1359
||||||||| | || ||||||||||||||||||||| || |||| |||||||| |||||
Sbjct 1509 ACGGTGTACTACGATTGGGCAATGCAACAAGTGGAGGCAGCAGAGTTAGGGGAGGATGCG 1568
Query 1360 ATTTATCCCATTTGGAGGCTCAGAGAGATG-TGTAGAAATGGTGTTCAAGCTCTCATTTA 1418
|||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||
Sbjct 1569 ATTTATCCCATTTGGAGGCTCAGAGAAATGCTG-AGAGCGGGTGTTCAAGCTCTCATTTA 1627
Query 1419 A 1419
|
Sbjct 1628 A 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5