BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20515.1
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480880 jgi|Araly1|480880|fgenesh2_kg.3__3581__AT2G20515.1 948 0.0
> Ahg480880 jgi|Araly1|480880|fgenesh2_kg.3__3581__AT2G20515.1
Length=732
Score = 948 bits (513), Expect = 0.0
Identities = 684/760 (90%), Gaps = 38/760 (5%)
Strand=Plus/Plus
Query 2 GAGGAGACCGATAACTCAAGCAAACTCAGATTCTTGATAGCGATTTAATGAAGACCCAAG 61
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1 GAGGAGACCGATAACTCAAGCAAACTCAGATTCTTGAGAGCGATTTAACGAAGACCCAAG 60
Query 62 AGTCCCAAGACCAAGGGCTGATTAATTAATGCTGTTTTAACCATATGCATATCATGGACA 121
||| ||||||| |||||||| ||||||||| |||| || | || ||||||||
Sbjct 61 AGTACCAAGACAAAGGGCTG----ATTAATGCT-TTTT-----TAGGGATCTCATGGACT 110
Query 122 CACTTTGTTCTCCGAGTCGACTCGTTCTGGTCACCTTCTTCCTCCTCTGCTTCTTTGCCG 181
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||
Sbjct 111 CACTTTGTTCTCCGAGTCGAATCGTTCTAGTCACTTTCTTCCTCCTCTGCTTCTTCGCCG 170
Query 182 GAGATTCATCGGCGACGAGGCCTGGTTTCATCTACACCAGACACAGAGGACGATGCACGC 241
||| || ||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 171 GAGCTTTATCGGCGACAAGACCTGGTTTCGTCTACACCAGACACAGAGGACGATGCACGC 230
Query 242 CGCAGTATTGGAGCAGCCAGAGGGAAGCATGGCCGAGGATGGTACCTGAGAGATCAACCG 301
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 231 CGCAGTATTGGAGCAGTCAGAGGGAAGCATGGCCGAGGATGGTACCGGAGAGATCAACGG 290
Query 302 TGGAGAAAATATTCGGAGTGATGGTAGCAAAAGAACGGTGGAGATCTGATCTAACGCTAG 361
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TAGAGAAGATATTCGGAGTGATGGTAGCAAAAGAACGGTGGAGATCTGATCTAACGCTAG 350
Query 362 TGGAATCAACGGCTAGGAATGACGAAGAAGGGAACGCGTACGGTGCATTGCTGAAACAGG 421
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 351 TGGAATCAACGGCTAGGAATGACGAAGAAGGGAACGCGTACGGTGCGTTGCTGAAACAGG 410
Query 422 GGATCGCAGCTCT-GATCAACTCTTACGCGAGAAAAAGTTTCTCTTATGCACCATGGGAA 480
||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 411 GGATCGCAGCTCTTG-TCAATTCTTACGCGAGAAGAAGTTTCTCTTATGCACCATGGGAA 469
Query 481 GTGAAGACGATGCTGATCCAAGCCATGGTTTCGGAGTCGGCGGCTCGCCGGCAAGCCGAA 540
||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 470 GTGAAGACGATGCTGATTCAAGCCATGGTTTCGGAGCCGGCTGCTCGCCGGCAAGCCGAA 529
Query 541 CATTTCGCCGTCGCTAACGTTGCTTGTGACTAAAAA--CACTGAGA--C-AGTTACTTTT 595
|| ||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||
Sbjct 530 CAGTTCGCCGTCGCTAACGTGGCTTGTGACTAAAAAAACACTGAGAATCTAGTTACTTTT 589
Query 596 GTCGTCTTTAGGTTTTGAATTTAAGCTTTTTGTCGTGTAACCAAAGTTTGATTCCGATCA 655
||||||||||||||| ||||||||||||||||||||||| || | | |
Sbjct 590 GTCGTCTTTAGGTTT-GAATTTAAGCTTTTTGTCGTGTA-CC-----------C--A--A 632
Query 656 GTTTGCTACTAGATTATGGGCCTCCGA----AAGGCCCAAATTAAACACAGACCTTGAGC 711
|||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||
Sbjct 633 GTTTGCTACTAGATGATGGGCCTACGTTTTTAAGGCCCAAATTAAACAGAGACCATGAGT 692
Query 712 GCTTTGTAGTGTTTGGGAACGACTCTTCTTATATACTCTC 751
| |||||||||||||| |||||||||||||||||||||||
Sbjct 693 GTTTTGTAGTGTTTGGAAACGACTCTTCTTATATACTCTC 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28020343995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5