BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20520.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480881 jgi|Araly1|480881|fgenesh2_kg.3__3582__AT2G20520.1 1103 0.0
> Ahg480881 jgi|Araly1|480881|fgenesh2_kg.3__3582__AT2G20520.1
Length=744
Score = 1103 bits (597), Expect = 0.0
Identities = 695/744 (93%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 1 ATGTCCTCGTCACTATTCTCTTATGTTGTCCTCTTAATCTTCCTTTTCACCATCCCATAC 60
||||| || ||| ||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTCTTCATCAATATTCTCTTCTGTTGTCCTCTTCTTCTTCCTTTTCACCATCCCATAC 60
Query 61 ATTCAAAGCCAGCCCACTGCTCCAGCTCCAACCACTGAAAAAAGTCCCATCAATCTCACA 120
||||||||||| |||| |||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 61 ATTCAAAGCCAACCCATTGCTCCAGCTCCGACCACCGAAACAAGTCCCATCAATCTCACA 120
Query 121 GCGATTCTTGAAGCTGGTCACCAATTTACCACATTAATACAACTCCTCAACACAACTCAA 180
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 121 GCGATTCTTGAAACTGGTCACCAATTTACTACATTAATACGACTCCTCAACACAACTCAA 180
Query 181 GTCGGGTTTCAGGTAAGTGTACAACTCAATAGCTCTGACCAAGGGATGACTATATTTGCC 240
|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GTGGGGTTTCAGGTAAGTGTTCAACTCAATAGCTCTGATCAAGGGATGACTATATTTGCA 240
Query 241 CCAACAGATAACGCATTCAACAAGCTTAAACCCGGAACCCTAAACAGTCTGACATATCAA 300
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 241 CCAACAGATAACGCATTCAACAACCTTAAACCCGGAACTTTAAACAGTCTCACATATCAA 300
Query 301 CAACAAATCCAGCTCATGCTCTACCATATCATTCCAAAATACTACTCTCTAAGCGATCTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CAACAAATCCAGCTCATGCTCTACCATATCATTCCAAAATACTACTCTCTGAGCGATCTT 360
Query 361 CTCTTAGCAAGTAATCCCGTTAGAACTCAGGCTACGGGACAAGACGGAGGTGTTTTTGGG 420
|| ||||||||||||||| |||||||||||||||||||| | || ||||| ||||||||
Sbjct 361 CTATTAGCAAGTAATCCCATTAGAACTCAGGCTACGGGATATGAAGGAGGCGTTTTTGGA 420
Query 421 TTAAATTTCACAGGACAAGCACAAAGCAACCAAGTGAATGTTTCCACCGGTGTTGTTGAG 480
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 421 TTAAATTTTACAGGACAAGCACAAAGCAACCAAGTGAATGTTTCGACGGGTGTTGTTGAG 480
Query 481 ACTCGGATCAATAATGCATTAAGGCAACAGTTTCCTCTAGCAGTTTACGTGGTGGACAGT 540
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 481 ACTCGGATCAATAATGCATTAAGACAACAGTTTCCACTAGCAGTTTACGTGGTGGACAGT 540
Query 541 GTGTTGTTGCCGGAGGAGTTATTCGGAACAAAGACCACTCCCACCGGAGCTCCTGCCCCG 600
|||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GTGTTGTTACCCGAAGAGTTGTTCGGAACAAAGACCACTCCCACCGGAGCTCCGGCCCCG 600
Query 601 AAATCCTCAACTTCATCGTCTGATGCCGATTCTCCAGCTGCTGATGATGAGCACAAATCT 660
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 AAATCCACAACTTCATCGTCTGATGCCGATTCTCCAGCTGGTGATGATGAGCACAAATCT 660
Query 661 GCCGGATCAAGCGTGAAGAGGACAAGTCTAGGGATTGTTGTTAGCTTTGCATTGTTTTGT 720
|||||||||||| |||||| |||||||||| |||||||| || |||||||||||||||||
Sbjct 661 GCCGGATCAAGCATGAAGAAGACAAGTCTACGGATTGTTCTTGGCTTTGCATTGTTTTGT 720
Query 721 TGCTCGGTTATATATATTGCTTGA 744
|| ||||||||||||||| |||||
Sbjct 721 TGTTCGGTTATATATATTTCTTGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5