BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20530.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1 1698 0.0
Ahg491917 jgi|Araly1|491917|fgenesh2_kg.7__1350__AT4G28510.1 752 0.0
Ahg470361 jgi|Araly1|470361|fgenesh2_kg.1__315__AT1G03860.1 472 4e-132
> Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1
Length=1113
Score = 1698 bits (919), Expect = 0.0
Identities = 1053/1116 (94%), Gaps = 15/1116 (1%)
Strand=Plus/Plus
Query 1 AACAAAATCCTGATTTCTGAGCTTTAAACCCTAA-CCC-CTC-TCTTCTCTCTTCTCCAC 57
||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||| |
Sbjct 1 AACAAAATCCTGATTGCTGAGCTTTAAACCCTAACCCCTCTCTTCTTCTCTCTTCTCCTC 60
Query 58 GCCATTTCCAGAATTTTCAGGTGTTC-G-TGAAAA-GATGAATTTTAAGAATGTCAAAGT 114
|||||||||||||||||||||| ||| | | |||| ||||||||||||||||||||||||
Sbjct 61 GCCATTTCCAGAATTTTCAGGTCTTCGGCT-AAAACGATGAATTTTAAGAATGTCAAAGT 119
Query 115 TCCCAAAGGTCCTGGTGGTGGTGTTATAGCTGCGGTGGTTATTGGGGGGCTCAGTCTTTA 174
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 120 TCCCAAAGGTCCTGGTGGTGGTGTTATAGCTGCGGTGGTTATTGGTGGGCTCGGTCTTTA 179
Query 175 CGGTGCTACGCACACTCTCTACAATGTCGATGGAGGTCATCGAGCCATTGTCTTTAACCG 234
||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CGGCGCTACACACTCTCTCTACAATGTCGATGGAGGTCATCGAGCCATCGTCTTTAACCG 239
Query 235 GCTTGTTGGTATCAAAGACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTT 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 GCTTGTTGGTATCAAAGACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCGTGGTT 299
Query 295 CGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGG 354
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 300 CGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGTACATCCGG 359
Query 355 GAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGA 414
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 360 GAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCGGGTTCTTACCCGTCCTATGGCCAA 419
Query 415 CCAATTACCAGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGTCTTGCCTTC 474
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 CCAACTACCAGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGTTTTGCCTTC 479
Query 475 TATCATCCACGAGACCTTGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTAC 534
||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 480 TATCATCCATGAGACCTTGAAAGCTGTGGTTGCTCAGTACAATGCGAGCCAGCTTATTAC 539
Query 535 TCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAATCCTAACT-CTAAGAGCCGCAAACT 593
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 540 CCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAATCCTAACTGC-ACGAGCCGCAAACT 598
Query 594 TCCACATTGCACTGGATGATGTGTCCATCACAGGCTTGACATTCGGAAAGGAGTTCACGG 653
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 TCTACATTGCACTGGATGATGTGTCCATCACAGGCTTGACATTTGGAAAGGAGTTCACGG 658
Query 654 CAGCCATAGAAGGAAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCG 713
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 659 CAGCCATAGAAGGAAAGCAGGTCGCAGCTCAAGAGGCCGAGCGGGCTAAGTTCATTGTGG 718
Query 714 AGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGGGAGAAGCCAAGAGTG 773
| |||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||
Sbjct 719 AAAAAGCTGAACAGGACAAGCGAAGTGCCGTTATTCGCGCTGAGGGAGAAGCCAAGAGTG 778
Query 774 CTCAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCG 833
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CTCAGCTCATAGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACGCTGAGGAAGATCG 838
Query 834 AAGCAGCTAGAGAGATCGCACAGACCATCTCTAGGTCGGCGAACAAGGTTTACTTGAGCT 893
||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||
Sbjct 839 AAGCAGCTAGAGAGATCGCACAGACCATCTCAAAGTCGGCAAATAAGGTTTACTTGAGCT 898
Query 894 CTAACGATCTGTTGCTTAACCTACAGGCTATGGACCTTGATGTGAAGCCGAAGAAGTAGA 953
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 CTAACGATCTATTGCTTAACCTACAGGCTATGGACCTTGATGTGAAGCCCAAGAAGTAGA 958
Query 954 GAATGATATGATTAAACCACACCAGAGCTCT-TCT-T-CCATAATCGTATTTTCAATTCA 1010
| |||||||||||||||||| |||||||||| ||| | |||||||||| ||| |||||||
Sbjct 959 GGATGATATGATTAAACCACGCCAGAGCTCTCTCTCTTCCATAATCGTCTTTCCAATTCA 1018
Query 1011 CGGATTCTTAGACCAAAAGCTATG-AGTTCTATCTTGTGAATTTCAGACACTATCGTGCG 1069
||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1019 CGGATTCTTAGACTAAAAGCTATGGA-TTCTATCTTGTGAATTTCAGACACTATCGTGCG 1077
Query 1070 TTT-GTAGTCTTTCTTTTGTGAGATCAAGAAGAAAA 1104
||| ||||||||||||||| ||||||||||| ||||
Sbjct 1078 TTTTGTAGTCTTTCTTTTGGGAGATCAAGAAAAAAA 1113
> Ahg491917 jgi|Araly1|491917|fgenesh2_kg.7__1350__AT4G28510.1
Length=1016
Score = 752 bits (407), Expect = 0.0
Identities = 740/896 (83%), Gaps = 41/896 (5%)
Strand=Plus/Plus
Query 87 AAA-AGATGAATTTTAAGAATGTCAAAGTTCCCAAAGGT-CCTGGTGGTGGTG---TTAT 141
||| |||||||||| || || ||||||||| || ||||| || |||||||||| || |
Sbjct 91 AAAGAGATGAATTTGAACAACGTCAAAGTT-CCGAAGGTGCCAGGTGGTGGTGCCATT-T 148
Query 142 -AGC--TGC----GGT--GG-TTATTGGGGGGCTCAGTCTTTACGGTGCTACGCACACTC 191
|| ||| | | || ||||||| ||||| |||| ||||||||||| |||| ||
Sbjct 149 CGGCGTTGCTTAAGATCGGGATTATTGGTGGGCTTGGTCTCTACGGTGCTACACACAGTC 208
Query 192 TCTACAATGTCGATGGAGGTCATCGAGCCATTGTCTTTAACCGGCTT-GTTGGTATCAAA 250
|||||||||| || ||||| ||||||||||| | || || | | || | ||||| |||
Sbjct 209 TCTACAATGTTGAAGGAGGACATCGAGCCATCATGTTCAATC-GTTTAATCGGTATTAAA 267
Query 251 GACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCATC 310
|| ||||| |||||||||||||| ||||||||| |||| ||||| |||||||| |||||
Sbjct 268 GATAAGGTTTACCCTGAGGGTACACACCTTATGGTTCCTTGGTTTGAAAGGCCGGTCATC 327
Query 311 TATGACGTTCGTGCAAAG-CCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCA 369
||||||||||| || | ||||| || |||||||| ||||| || ||||||||||| ||
Sbjct 328 TATGACGTTCGCGC-TCGACCTTACCTTGTTGAGAGTACATCCGGAAGCCGTGATCTTCA 386
Query 370 GATGGTTAAGATTGGGCTTC-GGGTTCTCACCCGTCCTATGGCTGACCAATTACCAGAGG 428
|||||| || ||||||| || |||||||||| ||||| ||||| ||||| ||||| ||
Sbjct 387 GATGGTGAAAATTGGGC-TCAGGGTTCTCACGCGTCCCATGGCAGACCAGTTACCTGAAA 445
Query 429 TATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAG-TCTTGCCTTCTATCATCCACGAG 487
| ||| | ||||||||||||| ||| ||||||||| || |||||||||| ||||| |||
Sbjct 446 TCTACAGAACCCTTGGTGAGAACTACAGCGAGAGAGTTC-TGCCTTCTATAATCCATGAG 504
Query 488 ACCT-TGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGTC 546
| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 505 A-CTCTGAAAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGGC 563
Query 547 GGTGAGTAGAGAAATCAGGAAAATCCTAACT-CTAAGAGCCGCAAACTTCCACATTGCAC 605
||| ||||| || |||||||| || || ||| | | |||| ||||||||| || |||| |
Sbjct 564 GGTCAGTAGGGAGATCAGGAAGATTCTGACTGC-ACGAGCAGCAAACTTCAACGTTGCGC 622
Query 606 TGGATGATGTGTCCATCACAG-GCTTGACATTCGGAAAGGAGTTCACGGCAGCCATAGAA 664
| || |||||||||||||| | | |||||||||| ||||||||||| || ||||| |||
Sbjct 623 TTGACGATGTGTCCATCAC-GACCCTGACATTCGGGAAGGAGTTCACAGCTGCCATTGAA 681
Query 665 GGAAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCGAGAAAGCTGAA 724
| |||||||| || ||||||||||| || |||||||||||||| || ||||| || |||
Sbjct 682 GCCAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAGTTCATCGTTGAGAAGGCCGAA 741
Query 725 CAGGACAAGAGAAGTGCTGTTATCCGCGC-CGAGGGAGAAGCCAAGAGTGCTCAGCTCAT 783
|| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 742 CAAGACAAGAGAAGTGCTGTTATCCGCGCAC-AGGGAGAAGCCAAGAGTGCTCAGCTCAT 800
Query 784 TGGTCAAGCAATCGCAAACAACCAAGCGTTCT-TAACACTGAGGAAGATCGAAGCAGCTA 842
|||||||||||| ||||||||||||||||| | | || || |||||||| || || || |
Sbjct 801 TGGTCAAGCAATTGCAAACAACCAAGCGTT-TATCACGCTCAGGAAGATAGAGGCTGCAA 859
Query 843 GAGAGATCGCACAGACCATCTCTAGGTCGGCGAACAAGGTTTACTTGAGCTCTA-ACGAT 901
||||||| ||||||||||| | | || ||||||||||| ||||||||||| | |||||
Sbjct 860 GAGAGATTGCACAGACCATAGCAAACTCTGCGAACAAGGTGTACTTGAGCTC-AGACGAT 918
Query 902 CTGTTGCTTAACCTACAGGCTATGGACCTTG-ATGT-GAAGCCGAAGAAGTAGAGA 955
||||||||||||||||| | ||| | ||| |||| || || ||||||||||||
Sbjct 919 CTGTTGCTTAACCTACAAGAGATGAAT-TTGGATGTCGATGCA-AAGAAGTAGAGA 972
> Ahg470361 jgi|Araly1|470361|fgenesh2_kg.1__315__AT1G03860.1
Length=1205
Score = 472 bits (255), Expect = 4e-132
Identities = 585/742 (79%), Gaps = 32/742 (4%)
Strand=Plus/Plus
Query 190 TCTCTACAATGTCGATGGAGGTCATCGAGCCATTGTC-T-TT-AACCGGCTT-GTTGGTA 245
||||||||||||||||||||| || || | | |||| | || |||| | || |||||
Sbjct 202 TCTCTACAATGTCGATGGAGGACACCGTG-C--TGTCATGTTCAACC-GATTAACTGGTA 257
Query 246 TCAAAGACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAA 305
|||| || ||||| ||||| ||||| || || ||||||| |||||||| ||||||||||
Sbjct 258 TCAAGGAAAAGGTATACCCAGAGGGCACACATTTTATGATGCCATGGTTTGAAAGGCCAA 317
Query 306 TCATCTATGACGTTCGTGCAA-AGCCTTATCTAGTTGAGAGCAC-ATCTGGGAGCCGTGA 363
|||||||||||||||||||| | |||||||| || |||||||| | | || || | |||
Sbjct 318 TCATCTATGACGTTCGTGCACGA-CCTTATCTTGTAGAGAGCACCACC-GGTAGTCATGA 375
Query 364 TCTCCAGATGGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACC 423
|| |||||||| || ||||| || |||||||||| ||||| |||| ||| | || ||
Sbjct 376 CCTTCAGATGGTGAAAATTGGACTAAGGGTTCTCACACGTCCCATGGGTGATCGTTTGCC 435
Query 424 AGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGT-CTTGCCTTCTATCATCC 482
|| | ||||| |||| || ||||| ||| | || || || || ||||| |||||||
Sbjct 436 TCAGATTTACCGAACCCTCGGCGAGAACTACAGTGAAAGGGTTCTA-CCTTCCATCATCC 494
Query 483 ACGAGACCTTGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAG 542
| || ||| | ||||| ||||| ||||||||||| |||||||| || ||||| |||||||
Sbjct 495 ATGAAACCCTAAAAGCCGTGGTAGCTCAGTACAATGCAAGCCAGCTCATTACACAGAGAG 554
Query 543 A-GTCGGTGAGTAGAGAAATCAGGAAA-ATCCTAACTCTAA-GAGCCGCAAACTTCCACA 599
| | | ||||| ||||| || | | || || || || | | || | ||||| |||
Sbjct 555 AAG-CTGTGAGCAGAGAGAT-ACGCAAGATTCTGACAG-AGCGGGCTTCTAACTTTGACA 611
Query 600 TTGCACTGGATGATGTGTCCATCACAGGCT-TGACATTCGG-AAAGGAGTTCACGGCAGC 657
|||| || |||||||| |||||||| | || | |||||||| |||| ||||||| |||||
Sbjct 612 TTGCTCTTGATGATGTCTCCATCAC-GACTCTCACATTCGGCAAAG-AGTTCACCGCAGC 669
Query 658 CATAGAAGG-AAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCGAGA 716
|| || || ||| || ||||||||||| || || ||| |||||||||||||||| ||||
Sbjct 670 AATCGA-GGCAAAACAAGTCGCTGCTCAGGAAGCTGAAAGGGCTAAGTTCATTGTGGAGA 728
Query 717 AAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGC-CGAGGGAGAAGCCAAGAGTGCT 775
|||| || || |||| ||||||||| |||||||| || | |||||||||| || ||||||
Sbjct 729 AAGCCGAGCAAGACAGGAGAAGTGCGGTTATCCGTGCAC-AGGGAGAAGCTAAAAGTGCT 787
Query 776 CAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCGAA 835
||||| || || |||||||| || || || || || ||| | || ||||| ||||| |||
Sbjct 788 CAGCTTATCGGACAAGCAATTGCGAATAATCAGGCATTCATCACTCTGAGAAAGATTGAA 847
Query 836 GCAGCTAGAGAGATCGCACAGACCAT--CTCTAGGTCGGCGAACAAGGTTTACTTGAGCT 893
|| || |||||||| || |||||||| | ||| || || ||||| |||||| ||||||
Sbjct 848 GCGGCGAGAGAGATTGCTCAGACCATTGCACTA--TCTGCTAACAAAGTTTACCTGAGCT 905
Query 894 CTAACGATCTGTTGCTTAACCT 915
| ||||||||||||||||||||
Sbjct 906 CCAACGATCTGTTGCTTAACCT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5