BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20550.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2 1260 0.0
Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1 773 0.0
> Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2
Length=1232
Score = 1260 bits (682), Expect = 0.0
Identities = 931/1044 (89%), Gaps = 45/1044 (4%)
Strand=Plus/Plus
Query 175 CCC-AGAAATGCGGATGATATATATTCTGAGTTCTTTGGGGTCTCTAGCCCTTCTGGTCC 233
||| ||||| ||||||||||||| ||||||||||||| || ||||||||| |||||
Sbjct 219 CCCGAGAAAGGCGGATGATATATTTTCTGAGTTCTTT--GG----TAGCCCTTCAGGTCC 272
Query 234 AAGAAATAAGGATGATATATTTTCTGAGTTCTTTGAGGTCTCTAACCCTTCTGGTCCGAG 293
|||| | ||||||||||| | |||||||||| |||||||| |||||| ||||||||
Sbjct 273 GAGAACTGCGGATGATATATCAGCAGAGTTCTTTGGGGTCTCTAGCCCTTCAGGTCCGAG 332
Query 294 AGA-TAAGGATGATATATCTGCTGAGTACTTTGGGGTCCCTAG-CC--CT--T-CTG--G 344
| | | ||||||||||| | |||| | ||||| ||||||| || || | ||| |
Sbjct 333 A-ACTGCGGATGATATATTTTCTGAATTCTTTGAATTCCCTAGACCTTCTGCTGCTGCTG 391
Query 345 C-AGTGGCAGCAGTGGAGGCAG-AGAAGGAGGAGGTGGTGGTGGTGGCACAAT-GCATCA 401
| |||| | |||| ||| | | ||||||| ||||||||||| ||| | || ||||||
Sbjct 392 CTGGTGGTAATGGTGGCGGCGGCA-AAGGAGGTGGTGGTGGTGGCGGCTC-ATCGCATCA 449
Query 402 CGGTGGAGCTAGGAAGGCAGCTCCTGTTGaaaaaaaGTTGCCTTGTAGCCTTGAAGATCT 461
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 450 CGGTGGAGCTAGAAAGGCAGCTCCTGTTGAAAAAGAGTTGCCTTGTAGCCTTGAAGATCT 509
Query 462 TTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGAGAGATTGCTGGTGTCTTTGGCAA 521
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 510 TTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGGGAGATTGCTGGTGTCTTTGGCCA 569
Query 522 GACGACGCAGGTACAAGAGATTTTGACTGTTGATGTGAAACCGGGGTGGAAGACA-GGCA 580
||||| |||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 570 GACGATGCAGGTACAAGAGATTTTGACTGTTGATGTGAAACCAGGGTGGAAGA-AGGGCA 628
Query 581 CAAAGATCACATTCTCGGAGAAAGGAAATGAGCAACCCGGTGTGATACCAGCGGATTTAG 640
|||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 629 CAAAGATCACATTCACGGCGAAAGGAAATGAGCAACCCGGTGTGATTTCAGCGGATTTAG 688
Query 641 TCTTCATCATAGATGAGAAGCCTCATCCGGTTTTCACTCGAGAGGGTAATGACCTCGTAG 700
|||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 689 TCTTCATCATCGATGAGAAGCCTCATCCGATTTTCACTCGAGATGGTAACGACCTCGTAG 748
Query 701 TCACACAGAAGATCTCAGTTCTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACAC 760
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TCACACAGAATATCTCAGTTCTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACAC 808
Query 761 TTGATGGTCGGAGACTGACCATCCCAGTCAACACTGTGATCCATCCCGAGTATGTGGAAG 820
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 809 TTGATGGTCGGAGACTGACCATCCCAGTCAACACTGTGATCCATCCAGAGTACGTGAAAG 868
Query 821 TGGTTCCAAATGAAGGAATGCCGTTGCAGAAAGACCAGGCTAAGAAAGGCAACTTGAGGA 880
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 869 TGGTTCCAAATGAAGGAATGCCATTGCAGAAAGACCAGACTAAGAAAGGCAACTTGACGA 928
Query 881 TCAAATTTAACATCAAGTTCCCTACAACGTTAACCTCAGAGCAGAAGACAGGATTGAAGA 940
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 929 TCAAATTTAACATCAAGTTCCCTACAAGGTTAACCTCAGAGCAGAAGACAGGATTGAAGA 988
Query 941 AACTTCTCGGATGAATGGAGTTAAAATCAGCCCAGTCCAGTTAAAATCAGCCCAGTCCAG 1000
|| ||||||||||||| ||||||||||||||||| ||||| | || || | | |
Sbjct 989 AAATTCTCGGATGAATTGAGTTAAAATCAGCCCATTCCAG--ACAA-CA-C--A-T---- 1037
Query 1001 ACAAAACAATGTAGAATACGAGAGGAAGTATCAAAGCTCCTATATATTGTGATTAAATAC 1060
|||||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 1038 ---------TGTAGAATACGACAGGAAGCATCAAAGCTTCTATATATTGTGATTAAATAA 1088
Query 1061 TGTTGTGGCCTTTCTGATCGATTTGTAGCATATGTATGAATGAGTACTGTTGTGACCTTT 1120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGTTGTGCCCTTTCTGATCGATTTGTAGCATATGTATGAATGAGTACTGTTGTGACCTTT 1148
Query 1121 ATGATCGATTTGTAACGTATGTATAATTAAATACTGTTGT-ATATTTCTGATCGATTTGT 1179
||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1149 CTGATCGATTTGTAACATATGTATAATTAAATACTGTTGTGATCTTTCTGATCGATTTGT 1208
Query 1180 AACATATGTATGATTGAAGACGCC 1203
|||||||||||||||||| |||||
Sbjct 1209 AACATATGTATGATTGAATACGCC 1232
Score = 204 bits (110), Expect = 1e-51
Identities = 194/231 (84%), Gaps = 20/231 (9%)
Strand=Plus/Plus
Query 58 GAACGATTTCTGGAACATTCATTCCACACTCTGAGAAGAAACATGAGTCACCCGAGAAAT 117
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 170 GAACGATTTCTGGAACA-TCAGTCCACACTCTGAGAAGAAACATGAGTCACCCGAGAAAG 228
Query 118 GCAGATGATATATTTTCTGAGTTCTTTGGGGTCTCTAGACCTTCTGGTCCTTCTGGTCCC 177
|| |||||||||||||||||||||||||| | || ||||| ||||| |
Sbjct 229 GCGGATGATATATTTTCTGAGTTCTTTGG--T----AGCCCTTCAGGTCC----G----- 273
Query 178 AGAAATGCGGATGATATAT-ATTCTGAGTTCTTTGGGGTCTCTAGCCCTTCTGGTCCAAG 236
|||| |||||||||||||| | | |||||||||||||||||||||||||| ||||| ||
Sbjct 274 AGAACTGCGGATGATATATCAG-CAGAGTTCTTTGGGGTCTCTAGCCCTTCAGGTCCGAG 332
Query 237 AAATAAGGATGATATATTTTCTGAGTTCTTTGAGGTCTCTA-ACCCTTCTG 286
|| | |||||||||||||||||| |||||||| || ||| ||| |||||
Sbjct 333 AACTGCGGATGATATATTTTCTGAATTCTTTGAATTCCCTAGACC-TTCTG 382
> Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1
Length=1449
Score = 773 bits (418), Expect = 0.0
Identities = 543/604 (90%), Gaps = 6/604 (1%)
Strand=Plus/Plus
Query 367 GAAGGAGGAGGTGGTGGTGGTGGCACAATGCATCACGGTGGAGCTAGGAAGGCAGCTCCT 426
|||||||| || || ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 633 GAAGGAGGGGGCGGCGGTGGTGGCTCAATGCATCACGGTGGAGCTAGGAAGGCGGCTCCT 692
Query 427 GTTGaaaaaaaGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATG 486
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ATCGAAAATAAGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATG 752
Query 487 AAGATCTCTAGAGAGATTGCTGGTGTCTT-TGGCAAGACGACGCAGGTACAAGAGATTTT 545
| ||||||||| |||||||||| ||| | ||||||||| | ||| || ||||||||||
Sbjct 753 AGGATCTCTAGGGAGATTGCTGATGT-TAGTGGCAAGACAATGCAAGTGGAAGAGATTTT 811
Query 546 GACTGTTGATGTGAAACCGGGGTGGAAGACAGGCACAAAGATCACATTCTCGGAGAAAGG 605
||| |||||||||| || |||||||||| ||||||||||||||||||| | ||||||||
Sbjct 812 GACCATTGATGTGAAGCCAGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGG 871
Query 606 AAATGAGCAACCCGGTGTGATACCAGCGGATTTAGTCTTCATCATAGATGAGAAGCCTCA 665
||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 872 CAATGAGCAACCTGGTGTGATTCCAGCGGATTTAGTCTTCATCATTGACGAGAAGCCTCA 931
Query 666 TCCGGTTTTCACTCGAGAGGGTAATGACCTCGTAGTCACACAGAAGATCTCAGTTCTCGA 725
||||||||||||||||||||||| ||||||||||||||||||||||||||| || | ||
Sbjct 932 CCCGGTTTTCACTCGAGAGGGTAACGACCTCGTAGTCACACAGAAGATCTCACTTGTTGA 991
Query 726 GGCCTTTACCGGCTACACCGTCAACCTGACTACACTTGATGGTCGGAGACTGACCATCCC 785
|||||| || |||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct 992 GGCCTTGACAGGCTACACAGTGAACCTGACTACACTTGATGGTCGAAGACTGACAATCCC 1051
Query 786 AGTCAACACTGTGATCCATCCCGAGTATGTGGAAGTGGTTCCAAATGAAGGAATGCCGTT 845
||||| || ||| ||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 1052 AGTCACCAAAGTGGTCCATCCCGAGTACGAGGAAGTGGTTCCAAAGGAAGGAATGCCGTT 1111
Query 846 GCAGAAAGACCAGGCTAAGAAAGGCAACTTGAGGATCAAATTTAACATCAAGTTCCCTAC 905
||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1112 GCAGAAAGACCAGACTAAGAAAGGAAACTTGAGGATCAAATTCAACATCAAGTTCCCTAC 1171
Query 906 AACG-TTAACCTCAGAGCAGAAGACAGGATTGAAGAAACTTCTCGGATGAAT-GGAGTTA 963
|| | |||||||||||||||||||||||| ||||||| || ||||| ||||| || ||||
Sbjct 1172 AA-GATTAACCTCAGAGCAGAAGACAGGAGTGAAGAAGCTCCTCGGCTGAATTGG-GTTA 1229
Query 964 AAAT 967
|||
Sbjct 1230 TAAT 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5