BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20562.1

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906871 jgi|Araly1|906871|Al_scaffold_0003_3999                    339    1e-92


> Ahg906871 jgi|Araly1|906871|Al_scaffold_0003_3999
Length=222

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 210/223 (94%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  95   ATGGGAGATTGTAGACCTCTAGGTTTCTTAATAGGACTACCATTTGCTCTTGTTGCTCTC  154
            |||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct  1    ATGGGAGAATGTAGACCTCTGGGTTTCTTATTAGGATTACCATTTGCTCTTGTTGCTCTC  60

Query  155  GTTCTCGCCCTCGTTGGTGCTGTTATCTGGATCATTGGGACGGTATTGAGTTGTTTGTGC  214
            |||||  |||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   GTTCTTTCCCTAGTCGGTGCTGTTATCTGGATCATTGGGACGATATTGAGTTGTTTGTGC  120

Query  215  CCATGTTGCTTCTGTTTCGCTGCGCTGGCTAACTTCGCCGTT-GATCTCATCAAACTTCC  273
            |||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||
Sbjct  121  CCATGTTGCTTCTGTTTCGCTGCGTTGGCTAACTTCGCTGTTGGA-CTCATCAAACTTCC  179

Query  274  TATCAAAGTCCTCCGTTGGTTTACCCACTCCATTCCTTGTTAA  316
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TATCAAAGTCCTCCGTTGGTTTACCCACTCCATTCCTTGTTAA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17246326228


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5