BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20562.1 Length=476 Score E Sequences producing significant alignments: (Bits) Value Ahg906871 jgi|Araly1|906871|Al_scaffold_0003_3999 339 1e-92 > Ahg906871 jgi|Araly1|906871|Al_scaffold_0003_3999 Length=222 Score = 339 bits (183), Expect = 1e-92 Identities = 210/223 (94%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 95 ATGGGAGATTGTAGACCTCTAGGTTTCTTAATAGGACTACCATTTGCTCTTGTTGCTCTC 154 |||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||| Sbjct 1 ATGGGAGAATGTAGACCTCTGGGTTTCTTATTAGGATTACCATTTGCTCTTGTTGCTCTC 60 Query 155 GTTCTCGCCCTCGTTGGTGCTGTTATCTGGATCATTGGGACGGTATTGAGTTGTTTGTGC 214 ||||| |||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 GTTCTTTCCCTAGTCGGTGCTGTTATCTGGATCATTGGGACGATATTGAGTTGTTTGTGC 120 Query 215 CCATGTTGCTTCTGTTTCGCTGCGCTGGCTAACTTCGCCGTT-GATCTCATCAAACTTCC 273 |||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||| Sbjct 121 CCATGTTGCTTCTGTTTCGCTGCGTTGGCTAACTTCGCTGTTGGA-CTCATCAAACTTCC 179 Query 274 TATCAAAGTCCTCCGTTGGTTTACCCACTCCATTCCTTGTTAA 316 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TATCAAAGTCCTCCGTTGGTTTACCCACTCCATTCCTTGTTAA 222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17246326228 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5