BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20590.1

Length=1484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915419 jgi|Araly1|915419|Al_scaffold_0008_170                     161    1e-38


> Ahg915419 jgi|Araly1|915419|Al_scaffold_0008_170
Length=672

 Score =  161 bits (87),  Expect = 1e-38
 Identities = 95/99 (96%), Gaps = 0/99 (0%)
 Strand=Plus/Minus

Query  1022  AGTTGAAAGAGTGAAAACGAGAATAGGTGAAGCATGGGGAGTCTGCTCACACAAGAAGAT  1081
             |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  522   AGTTGAAAGAATGAAAACAAGAATAGGTGAAGCATGGGGAGTCTGCTCACACAAGAAGAT  463

Query  1082  CTTGGCTGGCTCTGCGGTGACAGCGTTTTGGAACTTGAC  1120
             |||||| ||||||||||||||| ||||||||||||||||
Sbjct  462   CTTGGCCGGCTCTGCGGTGACAACGTTTTGGAACTTGAC  424



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55535577210


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5