BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20610.1
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480895 jgi|Araly1|480895|fgenesh2_kg.3__3596__AT2G20610.1 2593 0.0
> Ahg480895 jgi|Araly1|480895|fgenesh2_kg.3__3596__AT2G20610.1
Length=1611
Score = 2593 bits (1404), Expect = 0.0
Identities = 1548/1617 (96%), Gaps = 11/1617 (1%)
Strand=Plus/Plus
Query 57 TTATAGAAAGAAGAACTCAAAGCACAGAGAGA-AGATGAGCGAAGAACAACCACACGCCA 115
||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 1 TTATAGAAAAAAGAACTCAAAGCAAAGAGAGATA-ATGAGCGAAGAACAACCACACGCCA 59
Query 116 ATCTAGCGGTTCCCGCGTTTAAAACTGAGAAAGAGCCCATAACGCAAACACGAAATGGTC 175
|||| ||||||||||||||||||||||||||||| |||||||||||||| | |||| |||
Sbjct 60 ATCTGGCGGTTCCCGCGTTTAAAACTGAGAAAGATCCCATAACGCAAACGCAAAATAGTC 119
Query 176 AAAGTAGCGTTTGGCGTTTCGGTGGAAGTGATAAGGCAGCGAAAGCATCCACCGTAACGC 235
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 120 AAAGTAGCGTTTGGCGTTTCGGTGGAAGCGATAAGGCAGCGAAAGCATCCACCGTAACAC 179
Query 236 TTAGAGGTGTCATCTACATGCTCTTCGACAACTGCGGCAAAGACGTCAATAAGACCATTT 295
| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 180 TGAGAGGTGTCATCTACATGCTCTTCGACAACTGCAGCAAAGATGTCAATAAGACCATTT 239
Query 296 TACCCCTCGGCCACGGTGACCCTTCCGTCTACCCTTGCTTCCGTACCTGTATCGAAGCTG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACCCCTCGGCCACGGTGACCCTTCCGTCTACCCTTGCTTCCGTACCTGTATCGAAGCTG 299
Query 356 AAGACGCCGTCGTCGACGTCCTTCGCTCCGGCAAAGGCAATTCTTACGGTCCCGGAGCTG 415
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGACGCCGTTGTCGACGTCCTCCGCTCCGGCAAAGGCAATTCTTACGGTCCCGGAGCTG 359
Query 416 GGATTCTCCCCGCAAGACGAGCCGTTGCTGATTATATGAACCGAGATCTTCCGCACAAGT 475
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGATTCCCCCCGCAAGACGAGCCGTTGCCGATTATATGAACCGAGATCTTCCGCACAAGT 419
Query 476 TAACGCCTGAAGATATTTTTCTGACCGCTGGATGCAACCAAGGGATAGAGATCGTGTTCG 535
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAACGCCGGAAGATATCTTCCTGACCGCTGGATGCAACCAAGGGATAGAGATCGTGTTCG 479
Query 536 AATCGTTGGCTCGACCAAACGCAAACATCTTGCTCCCACGTCCTGGCTTCCCTCACTACG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 AATCGTTGGCTCGACCAAACGCAAACATCTTGCTCCCACGTCCTGGCTTCCCTCATTACG 539
Query 596 ACGCTCGTGCTGCTTACAGTGGTCTCGAGGTTCGCAAGTTTGATCTTCTTCCCGAGAAAG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ACGCTCGTGCTGCTTACAGTGGTCTCGAGGTTCGCAAGTTTGATCTTCTTCCTGAGAAAG 599
Query 656 AATGGGAGATTGATCTTGAAGGTATCGAAGCCATTGCAGACGAGAACACTGTGGCTATGG 715
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 AATGGGAGATTGATCTCGAAGGTATTGAAGCCATTGCAGACGAGAACACTGTGGCTATGG 659
Query 716 TTGTAATTAACCCCAACAATCCCTGTGGAAATGTCTACTCTCACGACCATCTCAAAAAGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGTAATTAACCCCAACAATCCCTGTGGAAATGTCTACTCTCACGACCATCTCAAAAAGG 719
Query 776 TTGCAGAGACGGCTAGGAAGCTCGGGATAATGGTGATCTCAGACGAAGTATATGACCGAA 835
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 720 TTGCAGAGACGGCTCGTAAGCTGGGGATAATGGTGATCTCAGACGAAGTATATGACCAAA 779
Query 836 CTATATTCGGAGACAATCCATTTGTTTCAATGGGGAAGTTTGCTTCGATAGTCCCTGTAT 895
|||||||||||||||||||||||||| ||||||| ||||| || ||||| || ||||| |
Sbjct 780 CTATATTCGGAGACAATCCATTTGTTCCAATGGGAAAGTTCGCATCGATTGTTCCTGTGT 839
Query 896 TGACACTAGCAGGCATATCTAAGGGATGGGTTGTTCCTGGATGGAAAATTGGCTGGATCG 955
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGACACTAGCAGGTATATCTAAGGGATGGGTTGTTCCTGGATGGAAAATTGGCTGGATCG 899
Query 956 CCTTGAATGATCCCGAGGGCGTTTTCGAGACCACCAAGGTGTTACAATCCATCAAACAGA 1015
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 900 CCTTGAATGATCCCGAGGGCATTTTCGAGACCACCAAGGTGGTACAATCCATCAAACAGA 959
Query 1016 ATCTTGACGTAACTCCTGACCCTGCCACAATAATTCAGGCTGCACTTCCAGCGATCCTGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 ATCTTGACGTAACTCCTGACCCTGCCACAATAATTCAGGCTGCACTTCCCGCGATCCTGG 1019
Query 1076 AGAAAGCGGACAAAAACTTCTTTGCAAAGAAGAACAAGATACTCAAACATAATGTTGATT 1135
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAAAGCGGATAAAAACTTCTTTGCAAAGAAGAACAAGATACTCAAACATAATGTTGATT 1079
Query 1136 TGGTGTGTGATAGGCTCAAGGACATCCCCTGTGTCGTCTGTCCCAAGAAACCTGAGTCTT 1195
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1080 TGGTGTGTGATAGGCTTAAGGACATCCCCTGTGTCGTTTGTCCCAAGAAACCTGAGTCTT 1139
Query 1196 GCACTTACTTATTGACAAAG-TTGGAGCTGTCATTGATGGATAATATCAAGGACGATATA 1254
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 1140 GCACTTACTTATTGACAAAGCTTG-AGCTGTCATTGATGGATAACATCAAGGACGATATA 1198
Query 1255 GATTTTTGCGTAAAACTGGCCAGAGAGGAGAATCTCGTGTTTCTACCAGGGGATGCTCTG 1314
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1199 GATTTCTGCGTAAAGCTGGCCAGAGAGGAGAATCTCGTGTTTCTACCAGGTGATGCTCTG 1258
Query 1315 GGTTTGAAGAACTGGATGAGGATAACCATCGGAGTCGAAGCTCATATGCTTGAGGATGCA 1374
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 GGTTTGAAGAACTGGATGAGGATAACCATTGGAGTCGAAGCTCATATGCTTGAGGATGCA 1318
Query 1375 CTTGAGAGACTGAAGGGTTTCTGTACACGTCATGCCAAGAAGACAGAGACAGAAACTGAG 1434
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1319 CTTGAGAGATTGAAGGGTTTCTGTACACGTCATGCCAAGAAAACAGAGACAGAAACTGAG 1378
Query 1435 TCACTTCAAGCTTTGAAACTGAGTGATAATAATCTCGAAATGTAAAACAGAAGAGGATGT 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1379 TCACTTCAAGCTTTGAAACTGAGTGATAATAATCTCGAAATGTAAAACAGAAGAAG--GT 1436
Query 1495 GTGTGCCCAAAAGAATATTCTTATGATAGATAATTTTGATTCTTGCTTTTCCATTT--GA 1552
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||
Sbjct 1437 GTGTGCCCAAAAGAATATTCTTATGAT-GATAATTTTGATTCTTGTTTTTCCATTTTTGA 1495
Query 1553 TTTCCCAAAGTATTTGATTATCTACATTAATAAAAACTATGGTTA-TTTGTCAAATAGCA 1611
|||||| |||||||||||||||||| ||||||||||||||||||| ||| |||| || ||
Sbjct 1496 TTTCCCTAAGTATTTGATTATCTACGTTAATAAAAACTATGGTTAATTTTTCAA-TAACA 1554
Query 1612 ATATTGGGAACATAAATGAAGGATCTAGCATCCATGAAAGAGAATTTCTTTGTTTTT 1668
||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||
Sbjct 1555 ATATTGGGAACATAAATTAAGGATCTATCATCCATGAAAAAGAATTTCTTTGCTTTT 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5