BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20620.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319913 jgi|Araly1|319913|fgenesh1_pm.C_scaffold_3002929 758 0.0
> Ahg319913 jgi|Araly1|319913|fgenesh1_pm.C_scaffold_3002929
Length=759
Score = 758 bits (410), Expect = 0.0
Identities = 533/593 (90%), Gaps = 6/593 (1%)
Strand=Plus/Plus
Query 262 TTGATGACTGTAACCCAAGTCATGCTGCAATCGGTTGCACATATCAATTATCATATGATA 321
||| |||||||||||||| ||||| ||| ||||||||||||| || ||||||| |||| |
Sbjct 145 TTGGTGACTGTAACCCAACTCATGGTGCGATCGGTTGCACATTTCGATTATCAGATGACA 204
Query 322 TTGGATGCCTTTGATCCAGCCAACAATTCCCTTTCCAGTATTGAAATATG-CCTTTGGGA 380
||| ||||| ||||||||||||||||||| |||||||| ||||||| || | ||||||
Sbjct 205 TTGAATGCCATTGATCCAGCCAACAATTCATTTTCCAGTGTTGAAATCTGTGC-TTGGGA 263
Query 381 TGCTGCCGTAAAGAATAATGAGAAATTGAGATTAGTCACCACTTTTTGCAGCCTTGAAGG 440
|||| || || ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 264 TGCTTCCATAGAGAATGATGAGAACTTGAGATTAGTCACCACTTTTTGCAGCCTTGAAGG 323
Query 441 GTCTGGAGATA-AAGGTTCCCAATGGGA-TCCTAATGGTGTAGACGTGCTCTATACTGGT 498
|||||||| | |||| |||||||||| | | ||||||||||| || |||||| ||||
Sbjct 324 ATCTGGAGA-ACAAGGAACCCAATGGGATTTC-GATGGTGTAGACATGTTCTATAATGGT 381
Query 499 GTGATGCCTAAGTGGCTAGATGATGGTGCCCTTTCAGGAAGCGAGAAGCTACACTACTAT 558
|||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 382 GTGATGCCTAAGTGGCTAGATGATAGTGCAATTACAGGAAGCGAGAAGCTACACTACTAT 441
Query 559 GAGGTTAATGATTCCGATTTGCAAGAGAATAAATGGCTTCATCTATATGCTCAAGTTGGA 618
||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 442 GAGATTAATGATTCGGATTTGCAAGAGAATGAATGGCTTCATCTATATGCTCAAGTTGGA 501
Query 619 GCATACTCTAAGTGGGATCTTGGCATGGTTAAACATTTCCCATTGGAGATAAAGAAAGTA 678
|||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||| |
Sbjct 502 GCATACTCTAAGTGGGATCTTGACATGGTTAATCATCTCCTGTTGGAGATAAAGAAAGCA 561
Query 679 GTGGTACAAACAATGGAAGACGACATAGAGTCAAATTTGAAGTTGAAGTCGAGCAATGCT 738
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 562 GTGGTACAAACAAAGGAAGACGACATAGAGTCAAGTTTGAAGTTGAAGTCGAGCAATGCT 621
Query 739 ATCTTCTATATAACCTTCACGACTAGTGGAGGTGTCGAGTGCGCATGCATAATAAGGCAA 798
|||||||| ||||| ||||| ||| ||||||| | |||||||||||||||| ||||||||
Sbjct 622 ATCTTCTACATAACTTTCACTACTCGTGGAGGCGACGAGTGCGCATGCATAGTAAGGCAA 681
Query 799 ACGAGGAATGGAAGACCACAACACATGTGCCTTGAAATTAATAATGTTGAGAT 851
||| || ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 682 ACGTGGGATGGAAGACCACAACACATGTGCCTTGAAGTTAAAAATGTTGAGAT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5