BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20630.2
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931939 jgi|Araly1|931939|scaffold_304396.1 1349 0.0
Ahg491931 jgi|Araly1|491931|fgenesh2_kg.7__1364__AT4G28400.1 654 0.0
> Ahg931939 jgi|Araly1|931939|scaffold_304396.1
Length=880
Score = 1349 bits (730), Expect = 0.0
Identities = 806/844 (95%), Gaps = 0/844 (0%)
Strand=Plus/Plus
Query 168 AGAAACAAATTCTTGTAACAATGGCAGGCAGAGAGATTCTCCATAAGATGAAGGTTGGAT 227
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAACAAATTCTTGTAACAATGACAGGCAGAGAGATTCTCCATAAGATGAAGGTTGGAT 60
Query 228 TATGCGGATCTGACACAGGCAGAGGTAAAACCAAGGTGTGGAAGAACATCGCACACGGTT 287
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 TATGCGGATCTGACACAGGCAGAGGTAAAAGCAAGATGTGGAAGAACATCGCACACGGTT 120
Query 288 ATGACTTTGTGAAAGGCAAAGCGGGCCATCCGATGGAGGACTATGTTGTGTCTGAGTTCA 347
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 121 ATGACTTTGTGAAAGGCAAAGCGTGCCATCCAATGGAGGACTATGTTGTGTCTGAGTTCA 180
Query 348 AGAAAGTAGACGGCCATGATTTGGGTTTGTTTGCTATCTTTGATGGTCACTTAGGGCATG 407
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 181 AGAAAGTAGACGGCCATGATTTGGGTTTGTTTGCTATCTTTGACGGTCATTTAGGGCATG 240
Query 408 ATGTAGCCAAGTACTTGCAAACCAATCTCTTTGATAACATACTCAAAGAGAAGGATTTTT 467
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ATGTGGCCAAGTACTTGCAGACCAATCTCTTTGATAACATACTCAAAGAGAAAGATTTTT 300
Query 468 GGACTGATACGAAAAACGCTATAAGGAATGCATACATATCAACCGATGCTGTGATATTAG 527
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 GGACTGATACGGAAAACGCTATAAGGAATGCATACATATCAACGGATGCTGTGATATTAG 360
Query 528 AGCAGTCACTTAAACTTGGCAAAGGTGGATCAACGGCTGTAACAGGCATTCTGATAGATG 587
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 361 AGCAGTCACTTAAACTTGGCAAAGGCGGATCAACGGCTGTAACAGGCATCCTGATAGATG 420
Query 588 GGAAAACGCTAGTGATTGCTAACGTTGGAGACTCACGTGCAGTGATGTCAAAGAACGGTG 647
|||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 421 GGAAAAAGCTAGTGGTTGCTAATGTTGGAGACTCACGAGCAGTGATGTCAAAGAATGGTG 480
Query 648 TTGCTTCTCAACTCTCTGTTGATCATGAACCAAGCAAGGAACAAAAGGAAATAGAAAGCC 707
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 481 TTGCTTATCAACTCTCTGTTGATCATGAACCAAGCAAGGAGCAAAAAGAAATAGAAAGCC 540
Query 708 GTGGTGGCTTTGTATCAAATATTCCAGGGGATGTTCCAAGAGTTGATGGACAACTAGCGG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGGTGGCTTTGTATCAAATATTCCAGGGGATGTTCCAAGAGTTGATGGACAACTAGCGG 600
Query 768 TTGCTAGGGCGTTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGATCCAGACATAA 827
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 TTGCGAGGGCATTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGAACCAGACATAA 660
Query 828 GAGACGAGAATATCGATCATGAGACTGAGTTTATCCTTTTCGCAAGTGATGGAGTTTGGA 887
| || ||| ||||||| ||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct 661 CACACCAGACTATCGATGATGAGACTGAGTTCATCGTTTTTGCAAGTGATGGAATTTGGA 720
Query 888 AGGTGATGTCGAACCAAGAAGCGGTGGATTTGATCAAAAGCATAAAAGATCCACAAGCGG 947
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 AGGTGTTGTCGAACCAAGAAGCGGTGGATGTGATCAAAAGCATAAAAGATCCACAAGCGG 780
Query 948 CAGCCAAGGAGTTGATAGAAGAAGCAGTCTCTAAGCAAAGCACAGACGACATTTCTTGTA 1007
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 781 CAGCCAAGGAGTTGATAGAAGAAGCAGTCTCTAAGAAAAGCACAGACGACATCTCTTGTA 840
Query 1008 TAGT 1011
||||
Sbjct 841 TAGT 844
> Ahg491931 jgi|Araly1|491931|fgenesh2_kg.7__1364__AT4G28400.1
Length=1177
Score = 654 bits (354), Expect = 0.0
Identities = 564/664 (85%), Gaps = 20/664 (3%)
Strand=Plus/Plus
Query 237 CTGACACAGGCAGAGGTAAAACCAAGGTGTGGAAGAACATCGCACACGGTTATGACTTTG 296
|||||| || ||||| |||| |||| |||||||||||||| | ||||||| | ||| ||
Sbjct 232 CTGACATGGGAAGAGGCAAAAGCAAGATGTGGAAGAACATCACCCACGGTTTTCACTGTG 291
Query 297 TGAAAGGCAAAG-CGGGCCATCCGATGGAGGACTATGTTGTGTCTGAGTTCAAGAAAGTA 355
|||| ||| ||| | |||||||||||||||| ||||| |||||||| ||||||||| |
Sbjct 292 TGAAGGGC-AAGTCCAGCCATCCGATGGAGGATTATGTAGTGTCTGAATTCAAGAAACTT 350
Query 356 GACGGCCATGATTTGGGTTTGTTTGCTATCTTTGATGGTCACTTAGGGCATGATGTAGCC 415
|| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 351 GAAGGGCATGAATTGGGTTTGTTTGCTATCTTTGATGGTCACTTGGGGCATGATGTGGCT 410
Query 416 AAGTACTTGCAAACCAATCTCTTTGATAACATACTCAAAGAGAAGGATTTTTGGACTGAT 475
|| |||||||| || ||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 411 AAATACTTGCAGACTAATCTCTTTGACAACATTCTTAAAGAGAAGGATTTTTGGACTGAC 470
Query 476 ACGA-AAAACGCTATAAGGAATGCATACATATCAACCGATGCTGTGATATTAG-AGCAGT 533
|| | | || |||||||||||||| |||| |||||| |||||||||||||| | ||||||
Sbjct 471 AC-AGAGAATGCTATAAGGAATGCGTACAGATCAACAGATGCTGTGATATT-GCAGCAGT 528
Query 534 CACTTAAACTTGGCAAAGGTGGATCAACGGCTGTAACAGGCATTCTGATAGATGG-GAAA 592
| ||||| ||||| ||||| |||||||| |||||||| || ||| |||| ||||| |||
Sbjct 529 CCCTTAAGCTTGGTAAAGGCGGATCAACCGCTGTAACCGGAATTTTGATTGATGGTCAAA 588
Query 593 ACGCTAG-TGATTGCTAACGTTGGAGACT-CACGTGCAGTGATGTCAAAGAACGGTGTTG 650
| ||||| || ||||||| |||||||||| || | ||||||||||| ||||| |||||||
Sbjct 589 A-GCTAGTTG-TTGCTAATGTTGGAGACTCCA-GAGCAGTGATGTCTAAGAATGGTGTTG 645
Query 651 CTTC-TCAACTCTCTGTTGATCATGAACCAAGCAAGGA-ACAAAAGGAAATAGAAAGCCG 708
| | ||| ||||| || |||||||||||||||||||| | |||| |||||||| |||||
Sbjct 646 C-GCATCAGCTCTCAGTCGATCATGAACCAAGCAAGGAGA-AAAAAGAAATAGAGAGCCG 703
Query 709 TGGTGGCTTTGTATCAAATATTCCAGGGGATGTTCCAAGAGTTGATGGACAACTAGCGGT 768
|| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 704 AGGCGGCTTTGTATCCAATATTCCAGGGGATGTTCCACGAGTTGATGGACAGTTAGCGGT 763
Query 769 TGCTAGGGCGTTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGATCCAGACATAAG 828
||| || || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 764 TGCAAGAGCATTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGAACCGGACATAAC 823
Query 829 AGACGAGA-ATATCGATCATGAGACTGAGTTTATCCTTTTCGCAAGTGATGG-AGTTTGG 886
| || ||| | || ||| || | ||||| || |||||||| || || ||||| | |||||
Sbjct 824 ACACCAGACA-ATTGATGATCACACTGAATTCATCCTTTTTGCCAGCGATGGTA-TTTGG 881
Query 887 AAGG 890
||||
Sbjct 882 AAGG 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5