BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20635.1 Length=1578 Score E Sequences producing significant alignments: (Bits) Value Ahg906880 jgi|Araly1|906880|Al_scaffold_0003_4008 1598 0.0 > Ahg906880 jgi|Araly1|906880|Al_scaffold_0003_4008 Length=1503 Score = 1598 bits (865), Expect = 0.0 Identities = 983/1036 (95%), Gaps = 23/1036 (2%) Strand=Plus/Plus Query 565 GGGTACCATGTAAGCAACAAAGTTTTCCCTGGAAAGGCCAACCTGTCATCTTTGCAGAAT 624 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 469 GGGTACCATGCAAGCAACAAAGTTTTCCCTGGAAAAGCCAACCTGTCATCTTTGCAGAAT 528 Query 625 TATTCCAGAAATAAGATCATTGAGATAGGTGGAAGAAAGTACCAGATGAAGGGCTGTGCT 684 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 529 TATTCCAGAAATAAGATCATTGACATAGGTGGAAGAAAGTACCAGATGAAGGGCTGTGCT 588 Query 685 GGCCAAGGTGGTTTTGCTCAAGTGTTCAAAGCATTCATTGACAGCAATCCTGATGAAGTA 744 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 589 GGCCAAGGTGGTTTTGCTCAAGTGTTCAAAGCATACATTGACAGCAATCCTGATGAAGTA 648 Query 745 GTTGCTCTAAAGGTACAAAAACCACCTTTTCCTTGGGAATTCCACATGTATCGCCAACTT 804 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 649 GTTGCTCTAAAGGTACAAAAGCCACCTTTTCCTTGGGAATTCCACATGTATCGCCAACTT 708 Query 805 GATTGCAGGATCCCAGATAGCCAAAGATCAAGTTTTGGATTGGCTCAGAGAGTGCACGTG 864 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 709 GATTGCAGGATCCCAGAGAGCCAAAGATCAAGTTTTGGATTGGCTCAGAGAGTGCACGTG 768 Query 865 TATTCAGACTACAGTATACTTGTCTGCGATTATTTATCACACGGGACACTCCAGGACGTC 924 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 769 TATTCAGACTACAGTATACTTGTCTGCGATTATCTATCACATGGGACACTCCAGGACGTC 828 Query 925 ATAAACTCGTATGTCGTTGTTGGAAAGTCCATGGAAGAAGTTTTGTGCATGTATTACACA 984 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 829 ATAAACTCGTATGTCGTTGTTGGCAAGTCCATGGAAGAAGTTTTGTGCATGTATTACACA 888 Query 985 ATAGAAATGCTGAACATGCTGGAGACTTTGCACAGTGTTGGAATCATTCATGGTGATTTC 1044 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 889 ATAGAAATGCTGTACATGCTGGAAACTTTGCACAGTGTTGGAATCATTCATGGTGATTTC 948 Query 1045 AAGCCAGACAATCTGCTGATCCGATACCCTCCAGAAAACCTAACTGAGACAGGCTTTCAT 1104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 AAGCCAGACAATCTGCTGATCCGATACCCTCCAGAAAACCTAACTGAGACAGGCTTTCAT 1008 Query 1105 GAGAAAACAGGTTCTTGGAGCAAGAAGGGTCTCTGTCTTGTTGACTGGGGTAGAGGAATA 1164 || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1009 GATAAAACAGGTTCTTGGAGCAATCAGGGTCTCTGTCTTGTTGACTGGGGTAGAGGAATA 1068 Query 1165 GACTTGAGCTTGTTTCCTAGAACCACCGAGTTTACAGGAGATTGTCGTACCTCAGGCTTC 1224 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 GACTTGAGCCTGTTTCCTAGAACCACCGAGTTTACAGGAGATTGTCGTACCTCAGGCTTC 1128 Query 1225 CGTTGCGTGGAGATGAAGGAGGATAAACCTTGGAAGTTTCAGG----T------------ 1268 |||||| |||||||||| || | ||||||||||||||||||| | Sbjct 1129 CGTTGCATGGAGATGAAAGAAAAGAAACCTTGGAAGTTTCAGGCAAGTCTTTTAATTCAC 1188 Query 1269 ---G-G-ACACTTATGGACTATGTGTAATCGTCCACATGATGCTGCACAAC-GTCTACAT 1322 | | |||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1189 ACTGTGGACACTTATGGACTATGTGTAATCGTCCACATGATGCTGCACAACTG-CTACAT 1247 Query 1323 GGAGATCGAGAAGAAGCAATCTCTGGACGGTGGCTACATTAATATGCCGAGAACTTCATT 1382 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1248 GGAGATCGAGAAGAAACAATCTCTGGACGGTGGCCACATTAATATGCCGAGAACTTCATT 1307 Query 1383 TAAAAGATACTGGAAGGTGGATCTGTGGAAAGAACTGTTCACGAAGCTGCTCAACAGAGA 1442 || |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1308 TAGAAGATACTGGAACGTGGATCTGTGGAAGGAACTATTCACGAAGCTGCTCAACAGAGA 1367 Query 1443 AACGTGTGAAGATGACACAGAGACACTGAGGAATCTGAGAAAGTCAATGGAAGAGTATAT 1502 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1368 GACGTGTGAAGATGACACAGAGACACTAAGGAATCTGAGAAAGTCAATGGAAGAGTATAT 1427 Query 1503 ATGCTCTGATCCTAAGCTCATGAAGAAGCTTAACGAGTTACTCGCCAAACAACGCATCTC 1562 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1428 ATGCTCCGATCCTAAGCTCATGAAGAAGCTTAACGAGTTACTCGCCAAACAACGCATCTC 1487 Query 1563 GTTATGCTCTTCGTAA 1578 ||||||||||||||| Sbjct 1488 TTTATGCTCTTCGTAA 1503 Score = 660 bits (357), Expect = 0.0 Identities = 406/430 (94%), Gaps = 2/430 (0%) Strand=Plus/Plus Query 23 CCGCCGGAGACCCGCTCTTCCCGTGGCTTATGGAGATTAAAAATTCGATGGAGGATCTAT 82 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 41 CCGCCGGAGACCCGCTCTTCCCGTGGCTTATGAAGATTAAAAATTCGATGGAGGATCTAT 100 Query 83 ACGCTGGTAAAAATTCCGGATACGATCTCGATAAGCTTCTATTTGATTGTATCTCAACTT 142 || |||||||||||||||| | ||||||||||||||||| | ||||||||||||||||| Sbjct 101 ACTCTGGTAAAAATTCCGGCGAAGATCTCGATAAGCTTCTCTATGATTGTATCTCAACTT 160 Query 143 ATAAGAAAGATTCTCGGTACCGAAATGACCTCAGATTCCTCAAGATCTGGTTTCTCTATC 202 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 161 ATAAGGAAGATACTCGGTACCGAAATGACCTCAGATTCCTCAAGATCTGGTTTCTTTACC 220 Query 203 TTGAAG-GCAGGGAAGATTTTGAGAGGGTTTATAGAGAAATTGAAGAGACTGAGATATGT 261 ||| || || | ||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 221 TTG-AGAGCTGTGAAGATTTTGAGAGGGTTTATAGAGAAGTTGAAGAGAATGAGATATGT 279 Query 262 AAAGGGCATTCGTTGCTCTATGAATGGTATGCTATTTTTCTTGAGGTCAAAGGATTGTGG 321 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 280 ATAGGGCATTCTTTGCTCTATGAATGGTATGCTATTTTTCTTGAGGTCAAAGGATTATGG 339 Query 322 CGAAGAGCAAATTCTGTTTATCAGACTGGTCTTTCAAGGAAAGCTGAACCATTTGACAGG 381 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 CGAAGAGCAAATTCGGTTTATCAGACTGGTCTTTCAAGGAAAGCTGAACCATTTGACAGG 399 Query 382 TTAAAAGAGGCTCACTCATTGTTCTTACAAAGAATCTCTAAGAGGACCAAAGCATCTTCC 441 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 400 TTAAAAGAGGCTCACTCGTTGTTCTTACAAAGAATCTCTAAGAGGACCAAAACATCTTCC 459 Query 442 CTTGAAAAGG 451 |||||| ||| Sbjct 460 CTTGAAGAGG 469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59116060240 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5