BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20635.1
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906880 jgi|Araly1|906880|Al_scaffold_0003_4008 1598 0.0
> Ahg906880 jgi|Araly1|906880|Al_scaffold_0003_4008
Length=1503
Score = 1598 bits (865), Expect = 0.0
Identities = 983/1036 (95%), Gaps = 23/1036 (2%)
Strand=Plus/Plus
Query 565 GGGTACCATGTAAGCAACAAAGTTTTCCCTGGAAAGGCCAACCTGTCATCTTTGCAGAAT 624
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 469 GGGTACCATGCAAGCAACAAAGTTTTCCCTGGAAAAGCCAACCTGTCATCTTTGCAGAAT 528
Query 625 TATTCCAGAAATAAGATCATTGAGATAGGTGGAAGAAAGTACCAGATGAAGGGCTGTGCT 684
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 529 TATTCCAGAAATAAGATCATTGACATAGGTGGAAGAAAGTACCAGATGAAGGGCTGTGCT 588
Query 685 GGCCAAGGTGGTTTTGCTCAAGTGTTCAAAGCATTCATTGACAGCAATCCTGATGAAGTA 744
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 589 GGCCAAGGTGGTTTTGCTCAAGTGTTCAAAGCATACATTGACAGCAATCCTGATGAAGTA 648
Query 745 GTTGCTCTAAAGGTACAAAAACCACCTTTTCCTTGGGAATTCCACATGTATCGCCAACTT 804
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 GTTGCTCTAAAGGTACAAAAGCCACCTTTTCCTTGGGAATTCCACATGTATCGCCAACTT 708
Query 805 GATTGCAGGATCCCAGATAGCCAAAGATCAAGTTTTGGATTGGCTCAGAGAGTGCACGTG 864
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GATTGCAGGATCCCAGAGAGCCAAAGATCAAGTTTTGGATTGGCTCAGAGAGTGCACGTG 768
Query 865 TATTCAGACTACAGTATACTTGTCTGCGATTATTTATCACACGGGACACTCCAGGACGTC 924
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 769 TATTCAGACTACAGTATACTTGTCTGCGATTATCTATCACATGGGACACTCCAGGACGTC 828
Query 925 ATAAACTCGTATGTCGTTGTTGGAAAGTCCATGGAAGAAGTTTTGTGCATGTATTACACA 984
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 829 ATAAACTCGTATGTCGTTGTTGGCAAGTCCATGGAAGAAGTTTTGTGCATGTATTACACA 888
Query 985 ATAGAAATGCTGAACATGCTGGAGACTTTGCACAGTGTTGGAATCATTCATGGTGATTTC 1044
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 889 ATAGAAATGCTGTACATGCTGGAAACTTTGCACAGTGTTGGAATCATTCATGGTGATTTC 948
Query 1045 AAGCCAGACAATCTGCTGATCCGATACCCTCCAGAAAACCTAACTGAGACAGGCTTTCAT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AAGCCAGACAATCTGCTGATCCGATACCCTCCAGAAAACCTAACTGAGACAGGCTTTCAT 1008
Query 1105 GAGAAAACAGGTTCTTGGAGCAAGAAGGGTCTCTGTCTTGTTGACTGGGGTAGAGGAATA 1164
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1009 GATAAAACAGGTTCTTGGAGCAATCAGGGTCTCTGTCTTGTTGACTGGGGTAGAGGAATA 1068
Query 1165 GACTTGAGCTTGTTTCCTAGAACCACCGAGTTTACAGGAGATTGTCGTACCTCAGGCTTC 1224
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GACTTGAGCCTGTTTCCTAGAACCACCGAGTTTACAGGAGATTGTCGTACCTCAGGCTTC 1128
Query 1225 CGTTGCGTGGAGATGAAGGAGGATAAACCTTGGAAGTTTCAGG----T------------ 1268
|||||| |||||||||| || | ||||||||||||||||||| |
Sbjct 1129 CGTTGCATGGAGATGAAAGAAAAGAAACCTTGGAAGTTTCAGGCAAGTCTTTTAATTCAC 1188
Query 1269 ---G-G-ACACTTATGGACTATGTGTAATCGTCCACATGATGCTGCACAAC-GTCTACAT 1322
| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1189 ACTGTGGACACTTATGGACTATGTGTAATCGTCCACATGATGCTGCACAACTG-CTACAT 1247
Query 1323 GGAGATCGAGAAGAAGCAATCTCTGGACGGTGGCTACATTAATATGCCGAGAACTTCATT 1382
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1248 GGAGATCGAGAAGAAACAATCTCTGGACGGTGGCCACATTAATATGCCGAGAACTTCATT 1307
Query 1383 TAAAAGATACTGGAAGGTGGATCTGTGGAAAGAACTGTTCACGAAGCTGCTCAACAGAGA 1442
|| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1308 TAGAAGATACTGGAACGTGGATCTGTGGAAGGAACTATTCACGAAGCTGCTCAACAGAGA 1367
Query 1443 AACGTGTGAAGATGACACAGAGACACTGAGGAATCTGAGAAAGTCAATGGAAGAGTATAT 1502
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1368 GACGTGTGAAGATGACACAGAGACACTAAGGAATCTGAGAAAGTCAATGGAAGAGTATAT 1427
Query 1503 ATGCTCTGATCCTAAGCTCATGAAGAAGCTTAACGAGTTACTCGCCAAACAACGCATCTC 1562
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 ATGCTCCGATCCTAAGCTCATGAAGAAGCTTAACGAGTTACTCGCCAAACAACGCATCTC 1487
Query 1563 GTTATGCTCTTCGTAA 1578
|||||||||||||||
Sbjct 1488 TTTATGCTCTTCGTAA 1503
Score = 660 bits (357), Expect = 0.0
Identities = 406/430 (94%), Gaps = 2/430 (0%)
Strand=Plus/Plus
Query 23 CCGCCGGAGACCCGCTCTTCCCGTGGCTTATGGAGATTAAAAATTCGATGGAGGATCTAT 82
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 41 CCGCCGGAGACCCGCTCTTCCCGTGGCTTATGAAGATTAAAAATTCGATGGAGGATCTAT 100
Query 83 ACGCTGGTAAAAATTCCGGATACGATCTCGATAAGCTTCTATTTGATTGTATCTCAACTT 142
|| |||||||||||||||| | ||||||||||||||||| | |||||||||||||||||
Sbjct 101 ACTCTGGTAAAAATTCCGGCGAAGATCTCGATAAGCTTCTCTATGATTGTATCTCAACTT 160
Query 143 ATAAGAAAGATTCTCGGTACCGAAATGACCTCAGATTCCTCAAGATCTGGTTTCTCTATC 202
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 161 ATAAGGAAGATACTCGGTACCGAAATGACCTCAGATTCCTCAAGATCTGGTTTCTTTACC 220
Query 203 TTGAAG-GCAGGGAAGATTTTGAGAGGGTTTATAGAGAAATTGAAGAGACTGAGATATGT 261
||| || || | ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 221 TTG-AGAGCTGTGAAGATTTTGAGAGGGTTTATAGAGAAGTTGAAGAGAATGAGATATGT 279
Query 262 AAAGGGCATTCGTTGCTCTATGAATGGTATGCTATTTTTCTTGAGGTCAAAGGATTGTGG 321
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 280 ATAGGGCATTCTTTGCTCTATGAATGGTATGCTATTTTTCTTGAGGTCAAAGGATTATGG 339
Query 322 CGAAGAGCAAATTCTGTTTATCAGACTGGTCTTTCAAGGAAAGCTGAACCATTTGACAGG 381
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 CGAAGAGCAAATTCGGTTTATCAGACTGGTCTTTCAAGGAAAGCTGAACCATTTGACAGG 399
Query 382 TTAAAAGAGGCTCACTCATTGTTCTTACAAAGAATCTCTAAGAGGACCAAAGCATCTTCC 441
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 400 TTAAAAGAGGCTCACTCGTTGTTCTTACAAAGAATCTCTAAGAGGACCAAAACATCTTCC 459
Query 442 CTTGAAAAGG 451
|||||| |||
Sbjct 460 CTTGAAGAGG 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59116060240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5