BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20680.1
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480902 jgi|Araly1|480902|fgenesh2_kg.3__3603__AT2G20680.1 2366 0.0
Ahg491940 jgi|Araly1|491940|fgenesh2_kg.7__1373__AT4G28320.1 1027 0.0
> Ahg480902 jgi|Araly1|480902|fgenesh2_kg.3__3603__AT2G20680.1
Length=1599
Score = 2366 bits (1281), Expect = 0.0
Identities = 1452/1533 (95%), Gaps = 18/1533 (1%)
Strand=Plus/Plus
Query 333 TTTTCTGAGATTTTCTTCACA-TCGTCCGAAACGTGGACACATTTTGATCTTTTGGGTGT 391
||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 81 TTTTCTGAGATTTTCTTCACATTC-TCCGAAACGTGGACACATTTTGATCTTTT---TG- 135
Query 392 CACTGTGTCAATAAAGGTTGAAACTTTGATTACA-TTTCTCTCAAAAGGAT-TAATTTTT 449
||||||||||| ||||||||||||||| || |||||||||||||| | |||||||
Sbjct 136 ---GGTGTCAATAAAAGTTGAAACTTTGATTGCATTTTCTCTCAAAAGG-TGCAATTTTT 191
Query 450 ATTTCTCTATCTGGGTGAGATTTGGATTAATTGGTGAGGAATCGGAAGAAACTGGCGAGA 509
||| | | |||| |||||| ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 192 ATTAC-CCATCTAGGTGAGGTTTGGATAAATTGGTGAGGAATCCGAAGAAACTGGCGAGA 250
Query 510 TTACAAGCGATTGTGAAATATCAGAATCTAATAAGAGGAAGAAGAGGCATGGCGGCTCCT 569
|||| ||||||| ||||||||||||| ||| ||||||||| ||||||||| |||||||
Sbjct 251 TTACTAGCGATTCTGAAATATCAGAAGCTATTAAGAGGAACAAGAGGCAT---GGCTCCT 307
Query 570 ACAGGGAACGGGCCAGTGATACCAATTCTAGGTTTCCTTACATGTGTGGCTTTTATCTAT 629
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 308 ACAGGGAACGGGCCAGTGATACCAATCCTAGGTTTTCTTACATGTGTGGCTTTTATCTAT 367
Query 630 CTCTCCTTTGGAGATTTGTGGTTCGGTCTCAAAACGGAGGGCGAGTTAGCATTCGTGAAA 689
||||| ||||| ||||||||||||| | |||||| |||||||||||||| |||||||||
Sbjct 368 CTCTCGTTTGGTGATTTGTGGTTCGATTTCAAAAGGGAGGGCGAGTTAGGGTTCGTGAAA 427
Query 690 CGGAATGGGACACAGTTTGTGGTCGATGGTAAGGCTCTGTATGTGAATGGTTGGAACTCT 749
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CGGAACGGGACACAGTTTGTGGTCGATGGTAAGGCTCTGTATGTGAATGGTTGGAACTCT 487
Query 750 TATTGGTTCATGGACCATGCTGTGAATGATCATAGTAGACATCGCGTTAGTGCTATGCTT 809
||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct 488 TATTGGTTCATGGACCATGCTGTGAATGATCATAGCAGACACCGTGTCGGTGCTATGCTT 547
Query 810 GAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACATGGGCTTTTAATGATGGAGGC 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACATGGGCTTTTAATGATGGAGGC 607
Query 870 TACAATGCTCTTCAGATCTCTCCTGGTAGATTCGATGAACGAGTTTTCAAGGCCTTAGAT 929
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 608 TACAATGCTCTTCAGATCTCTCCTGGTAGATTCGATGAACGAGTCTTCAAGGCTTTGGAT 667
Query 930 CATGTAATCGCAGAGGCCAAAACACATGGTGTTAGGTTGCTTCTGAGCTTAGTGAATAAC 989
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CATGTAATCGCAGAGGCAAAAACACATGGTGTTAGGTTGCTTCTGAGCTTAGTGAATAAC 727
Query 990 TTACAAGCTTATGGAGGGAAAACTCAGTACGTCAATTGGGCATGGCAGGAAGGTGTAGGC 1049
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 728 TTACAAGCTTATGGAGGGAAGACTCAGTACGTCAATTGGGCATGGCAGGAAGGTGTAGGC 787
Query 1050 CTCAGCTCATCCAATGATTCCTTCTTCTTTGACCCATCTATCCGCAGATACTTCAAGAAT 1109
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CTCAGCTCGTCCAATGATTCCTTCTTCTTTGACCCATCTATCCGCAGATACTTCAAGAAT 847
Query 1110 TATCTCACGGTGCTGCTGACCCGTAAAAACTCTTTAACCGGGATTGAGTACAGAAACGAC 1169
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 848 TATCTGACGGTGCTGCTGACCCGCAAAAACTCTTTAACCGGGATTGAGTACAGAAACGAC 907
Query 1170 CCAACAATTTTTGCATGGGAGTTGATAAACGAGCCTCGCTGCATGTCTGATGTCTCTGGG 1229
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 908 CCAACAATTTTTGCATGGGAATTGATAAACGAGCCTCGCTGCATGTCTGATGTCTCTGGG 967
Query 1230 GATACTCTACAAGACTGGATTAACGAAATGACAGCATTCATTAAATCAATTGACAACAAG 1289
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 968 GATACTCTACAAGACTGGATTAACGAAATGACAGCGTTCATTAAATCAATTGACAACAAG 1027
Query 1290 CATCTTCTAACTGTTGGCTTGGAAGGGTTCTACGGTCCCAGTAGCCCAAAAAAGCTGACA 1349
||||||||||| || ||||||||||||||||||||||||| || ||| ||| |||||||
Sbjct 1028 CATCTTCTAACCGTAGGCTTGGAAGGGTTCTACGGTCCCAATAACCCTAAACGGCTGACA 1087
Query 1350 GTTAACCCCGAACGGTGGGCCTCTGAGCTTGGGTCAGATTTTGTTCGAAACTCTGATTCG 1409
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GTTAACCCGGAACGGTGGGCCTCTGAGCTTGGGTCAGATTTTGTTCGAAACTCTGATTCG 1147
Query 1410 CCAAACATCGATTTTGCCTCGGTTCATATCTA-CCCTGATCACTGGTTTCACGATCAAGG 1468
||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||| ||
Sbjct 1148 CCAAACATCGATTTTGCATCAGTTCATATCTATCCC-GATCACTGGTTTCACGATCAGGG 1206
Query 1469 GTTTGAAGAAAAACTCAAGTTCGTTGTAAAATGGATGCTATCTCACATTGAAGATGGGGA 1528
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1207 GTTTGAAGAAAAACTCAAGTTTGTGGTGAAATGGATGCTATCTCACATTGAAGATGGGGA 1266
Query 1529 CAAGGAACTGAAGAAGCCTGTTCTGTTCACCGAGTTTGGACTCTCGAATCTGAACAAGGA 1588
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1267 CAAGGAACTGAAGAAGCCTGTTCTGTTCACCGAGTTTGGCCTCTCGAATCTGAACAAAGA 1326
Query 1589 CTACGATCCATCGCAGCGGGATCGGTTCTACAGAACCATCTTTGATGTTATTTACAAATC 1648
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CTATGATCCATCGCAGCGGGATCGGTTCTACAGAACCATCTTTGATGTTATTTACAAATC 1386
Query 1649 AGCCAAGAGGAAGCGGTCTGGTGCAGGAACACTAGTGTGGCAGTTTCTGATAGAAGGCAT 1708
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1387 AGCCAAGCGGAAGCGGTCTGGTGCAGGCACACTAGTGTGGCAGTTTCTGATAGAAGGCAT 1446
Query 1709 GGAAGGTTTCAACGATGACTTTGGAATAGTCCCATGGGAGCAAGACTCCATTCAGAGATT 1768
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1447 GGAAGGTTTCAACGATGACTTTGGAATAGTCCCGTGGGAACAAGATTCCATTCAGAGATT 1506
Query 1769 AATGATTGAACAGTCTTGCAGATTGAGTCGAATCACTGGACGCCATCTTCTTGACAAGAA 1828
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1507 AATGATTGAACAGTCTTGCAGATTGAGTCGAGTCACTGGACGCCATCTTCTTGACAAGAA 1566
Query 1829 GTCCATAGAAATGTGTTCCCATAGACCATGAGA 1861
|||||||||||||||||||||||||||||||||
Sbjct 1567 GTCCATAGAAATGTGTTCCCATAGACCATGAGA 1599
> Ahg491940 jgi|Araly1|491940|fgenesh2_kg.7__1373__AT4G28320.1
Length=1581
Score = 1027 bits (556), Expect = 0.0
Identities = 1019/1243 (82%), Gaps = 30/1243 (2%)
Strand=Plus/Plus
Query 566 TCCTACAGGGAACGGGCCAGTGATACCAATTCTA-GGTTTCCTTACATGTGTGGCTTTTA 624
||| ||| ||||| ||||| || ||| ||||||| ||||| ||| ||||| ||||| |
Sbjct 209 TCCCACAAGGAACAGGCCAATGCTACGAATTCTAGGGTTT-TTTATATGTGCAGCTTTCA 267
Query 625 TCTATCTCTCCTTT-GGAGATTTGTGGTTCGGTCTCA-AAACGGAGGGC-GAGTTAGCAT 681
||||| | || ||| || ||||| ||||| | ||| ||| ||| || |||||| |
Sbjct 268 TCTATTTATCATTTCGG-GATTTATGGTT--GAATCACAAAGGGAAAGCAAAGTTAGGGT 324
Query 682 TCGTGAAACGGAATGGGACACAGTTTGTGGTCGATGGTAAGGCTCTGTATGTGAATGGTT 741
| |||||| |||| || || ||||||||||| |||| |||| |||| ||||| |||||||
Sbjct 325 TTGTGAAAAGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTCTATGTAAATGGTT 384
Query 742 GGAACTCTTATTGGTTCATGGACCATGCTG-TGAATGATCATAGTAGACATCGCGTTAGT 800
||||||| |||||||||||||||||||| | || |||| ||||| ||| | | || ||
Sbjct 385 GGAACTCGTATTGGTTCATGGACCATGCGGTTG-ATGAACATAGCAGAAACCTTGTCGGT 443
Query 801 GCTATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACATGGGCTTTTAAT 860
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 444 GAAATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGGGCTTTCAAT 503
Query 861 GATGGAGGCTACAATGCTCTTCAGATCTCTCCTGGTAGATTCGATGAACGAGT-TTTCAA 919
|| || ||||| ||||| ||||||||||||||||| |||||||||| ||||| |||||
Sbjct 504 GACGGTGGCTATAATGCACTTCAGATCTCTCCTGGCCGATTCGATGAGCGAGTCTTTCA- 562
Query 920 GGCCTTAGATCATGTAATCGCAGAGGCCA-AAACACATGGTGTTAGGTTGCTTCTGAGCT 978
||| || ||||||||||| ||||| || | ||| |||| |||||| ||||| || ||||
Sbjct 563 GGCTTTGGATCATGTAATTGCAGAAGCGAGAAAG-CATGATGTTAGATTGCTGCTTAGCT 621
Query 979 TAGTGAATAACTTACAAGCTTATGGAGGGAAAACTCAGTACGTCAATTGGGCATGGCAGG 1038
||||||| ||||| ||||||||||||||||| || ||||| || || ||||||||||| |
Sbjct 622 TAGTGAACAACTTGCAAGCTTATGGAGGGAAGACACAGTATGTGAACTGGGCATGGCAAG 681
Query 1039 AAGGTGTAGGCCTCAGCTCATCCAATGATTCCTTCTTCTTTGACCCATCTATCCGCAGAT 1098
||||||| || |||| || ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 682 AAGGTGTTGGTGTCAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCTATCCGCA-AT 740
Query 1099 -ACTTCAAGAATTATCTCACGGTGCTGCTGACCCGTAAAAACTCTTTAACCGGGATTGAG 1157
|||||||||||||||||| ||| ||||| ||| | || ||||| |||| || || |||
Sbjct 741 TACTTCAAGAATTATCTCAAGGTTCTGCTCACCAGGAAGAACTCGGTAACTGGAATAGAG 800
Query 1158 TACAGAAACGACCCAACAATTTTTGCATGGGAGTTGATAAACGAGCCTCGCTGCATGTCT 1217
||||||||||| || || ||||| || ||||||||||||||||||||||| || | | ||
Sbjct 801 TACAGAAACGATCCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTCGATGTACGACT 860
Query 1218 GATGTCTCTGGGGATACTCTACAAGACTGGATT-AACGAAATGACAGCATTCATTAAATC 1276
||||||||||| | ||||| ||||||||||| || |||||||| | ||||||||||||
Sbjct 861 GATGTCTCTGGCAAAACTCTCCAAGACTGGATAGAA-GAAATGACGGGATTCATTAAATC 919
Query 1277 AATTGACAACAAGCATCTTCTAACTGTTGGCTTGGAAGGGTTCTACGGTCCCAGTAGCCC 1336
||| || |||||||||| || || || ||| ||||||| ||||| ||||| | |||||
Sbjct 920 AATCGATGACAAGCATCTCCTCACAGTAGGCCTGGAAGGTTTCTATGGTCCTAACAGCCC 979
Query 1337 AAAAAAGCTGACAGTTAACCCCGAACGGTGGGCCTCTGAGCTTGGGTCAGATTTTGTTCG 1396
||| ||| |||||||| || |||| |||||| || ||||| || |||| |||||||
Sbjct 980 GAAACGGCTCACAGTTAATCCAGAACAGTGGGCTTCCGAGCTCGGAACAGACTTTGTTCA 1039
Query 1397 AAACTCTGATTCGC-CAAACATCGATTTTGCCTCGGTTCATATCTACCCTGATCACTGGT 1455
||||||| |||| | ||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct 1040 AAACTCTAATTC-CTCAAACATTGATTTTGCATCCGTTCATATCTACCCCGATCACTGGT 1098
Query 1456 TTCACGATCA-AGGGTTTGAAGAAAAACTCAAGTTCGTTGTAAAATGGATGCTATCTCAC 1514
|||| |||| | |||||||| || || ||||| || || |||||||||| |||||||
Sbjct 1099 TTCATAATCAGACC-TTTGAAGAGAAGCTAAAGTTTGTGGTGAAATGGATGCAATCTCAC 1157
Query 1515 ATTGAAGATGGGGACAAGGAACTGAAGAAGCCTGTTCTGTTCACCGAGTTTGGACTCTCG 1574
||||||||||| || ||||| |||||||| ||||| ||||| |||||||| ||||||
Sbjct 1158 ATTGAAGATGGCTTTAAAGAACTCAAGAAGCCAGTTCTCTTCACAGAGTTTGGGCTCTCG 1217
Query 1575 AATCTGAACAAGGACTACGATCCATCGCAGCGGGATCGGTTCTACAGAACCATCTTTGAT 1634
|| ||||||||||||||||| ||||| ||||| || |||||||||| |||||| |||
Sbjct 1218 AACCTGAACAAGGACTACGAACCATCTCAGCGAGAGAAATTCTACAGAATCATCTTCGAT 1277
Query 1635 GTTATTTACAAATCAGCCAAGAGGAAGCGGTCTGGTGCAGGAACACTAGTGTGGCAG-T- 1692
|| ||||||||||||||||| | ||| ||| |||||||| ||| | |||||||| |
Sbjct 1278 GTGGTTTACAAATCAGCCAAGCGAAAGAAGTCAGGTGCAGGCACATTGGTGTGGCAACTA 1337
Query 1693 TTCTGATAGAAGGCATGGAAGGTTTCAACGATGACTTTGGAATAGT-CC-CATGGGAGCA 1750
||| || || ||||||||| ||||| ||||||||||||||| || || |||| | ||
Sbjct 1338 TTC--ATGGATGGCATGGAAACTTTCAGCGATGACTTTGGAATCGTTCCTCATGA-A-CA 1393
Query 1751 AGACTCCATTCAGAGATTAATGATTGAACAGTCTTGCAGATTG 1793
||| |||||| | | ||| ||||| ||||| |||||||| |||
Sbjct 1394 AGATTCCATTTATAAATTGATGATAGAACAATCTTGCAGGTTG 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895075300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5