BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20690.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480903 jgi|Araly1|480903|fgenesh2_kg.3__3604__AT2G20690.1 1596 0.0
> Ahg480903 jgi|Araly1|480903|fgenesh2_kg.3__3604__AT2G20690.1
Length=1108
Score = 1596 bits (864), Expect = 0.0
Identities = 1042/1123 (93%), Gaps = 32/1123 (3%)
Strand=Plus/Plus
Query 20 AAGTTTGGTTCTTGAGAAATGATGGCGGCTCGTACTCATTGTATCAACCTTATCCCCAAA 79
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 AAGATTGGTTCTTGAGAAATGATGGCTGCTCGTACTCATTGTATCAACCTCATCCCCAAA 60
Query 80 GTATGTCTTCCACAATCCTTCAGAACTGGAGAATCAGTGACTAATCTCAGATTTGATTGC 139
||||||||||| |||| | |||||||| |||||||||| |||||||||||||||||||
Sbjct 61 GTATGTCTTCCTCAAT-C--GAGAACTGGTGAATCAGTGAGTAATCTCAGATTTGATTGC 117
Query 140 GTCTCTAAGTCATCGAAGCTTTCTCTCAAGACATCATGTGGAAGATCAAGAACGCATCAC 199
|||||||| |||||||||||||||||||||||||||||| | | ||| | ||||||
Sbjct 118 GTCTCTAACTCATCGAAGCTTTCTCTCAAGACATCATGT-G--G---AAG-A--CATCAC 168
Query 200 CGGAGGCAAAATCTCAGCATCCGGTCCGTGTTTACTGGAATCGTGGAGGAAATGGGTGAA 259
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 169 CGGAGACAAAATCTCAGCATCCGATCCGTGTTTACTGGAATCGTGGAGGAAATGGGAGAA 228
Query 260 GTCAAGGACTTGGGAATGGCCGATCACGGAGGATTCGACCTCAAAATCGGAGCGAGAGTG 319
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 229 GTCAAGAACTTGGGAATGGCTGATCACGGAGGATTCGACCTCAAAATCGGAGCGAGAGTG 288
Query 320 GTGTTAGAGGACGTGAAGCTCGGTGACAGTATCGCCGTGAACGGTACTTGTTTAACGGTG 379
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 289 GTGTTAGAGGACGTGAAGCTCGGTGACAGCATCGCGGTGAACGGGACTTGTTTAACGGTG 348
Query 380 ACGGAGTTTAACGCAGAGGAGTTCACAGTAGGGTTAGCACCGGAGACGCTGAGAAAAACA 439
|||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 349 ACGGAGTTCAACGCAGAGGAGTTCACAGTGGGGTTAGCACCAGAGACGCTGCGAAAAACA 408
Query 440 TCGTTGGAGGAGTTAAAGAAAGGATCTCCGGTGAATCTGGAGCGTGCGTTGCAGCCAGTG 499
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TCGTTGGAGGAGCTAAAGAAAGGATCTCCGGTGAATCTGGAGCGTGCGTTGCAGCCAGTG 468
Query 500 AGCAGGATGGGTGGACACGTGGTTCAGGGACACGTGGATGGGACGGGAGTGATTGAATCA 559
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGCCGGATGGGTGGACACGTGGTTCAGGGACACGTGGATGGGACGGGAGTGATTGAATCA 528
Query 560 ATGGAGGTAGAGGGTGATTCTTTGTGGGTGAAGGTGAAAGCTGACAAGGGTTTGTTGAAA 619
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATGGAGGTAGAGGGTGATTCTCTGTGGGTGAAGGTGAAAGCTGACAAGGGTTTGTTGAAA 588
Query 620 TACATTGTGCCTAAAGGATTTGTGGCTGTTGATGGGACTAGCTTGACGGTTGTTGATGTG 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TACATTGTGCCTAAAGGATTTGTGGCTGTTGATGGGACTAGCTTGACGGTTGTTGATGTG 648
Query 680 TTTGATGAAGAGAGCTGTTTCAATTTCATGATGATTGCTTATACGCAACAGAATGTAGTG 739
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||| || |||
Sbjct 649 TTTGATGAAGAGAGTTGTTTCAATTTCATGATGGTTGCTTATACGCAGCAGAAAGTGGTG 708
Query 740 ATTCCGACTAAGAAG-ATTGGGCAGAAAGTGAATCTTGAGGTTGATATCATGGGGAAGTA 798
||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 709 ATTCCTACTAAGA-GTATTGGGCAGAAAGTGAATCTTGAGGTTGATATCATGGGGAAATA 767
Query 799 TGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCC---AA-A-GGAAAAG-AAAATATTTG 852
|||||||||||||||||||||||||||||||||| || | || | || |||| | ||
Sbjct 768 TGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCTTGAACATGGCAGAGGAAAAGAAATG 827
Query 853 ATTTGATGGGACTTGGGAGTGGGAGCTTT-GTTGAGCGGAGCTTGACCTTTTGGCCTGGG 911
||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||
Sbjct 828 ATTAGATGGGACTTGGGATTGGGAGCTTTTGGTGAGCGGAGCTTGACCTTTTGGCCTCGG 887
Query 912 GTT--A--TA---TGTAT-CTTAACCTCTGTTTCTTCGTAATGGTGCTAGTGAACAGTCC 963
||| | || ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 888 GTTCTAGGTAAGATGTATTCT-AACCTCTGTTTCTTCGTAATGGTGCTAGTGAACAGTCC 946
Query 964 ACGCATTTAGGCGCGGTGAGAAAAGTAAATCAACCTTATTGAGTAATGATGATCAAATCA 1023
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 947 ACGCATTTAGGCGCGGTGAGAAAAGTAGATGAACCTTATCGAGTAATGATGATCAAATCA 1006
Query 1024 TTCGTGTAATAAACCCAAGAATCAAATTTTGTAATATGGCAGTGCCCCTTTTAAAACTTA 1083
|||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||| | ||
Sbjct 1007 TTCGTGTAATAAACCCAAGAATCAAATTGTGTAATGTGGCATTGCCCTTTTTAAA-CATA 1065
Query 1084 GATTCTGTTATGCTT-TTGTTAGACCTTCATATGTATATCTTT 1125
||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1066 GATTCTGTTTTGCTTCTTGTTAGGCCTTCATATGTATATCTTT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5