BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20700.1
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480904 jgi|Araly1|480904|fgenesh2_kg.3__3605__AT2G20700.1 987 0.0
Ahg491945 jgi|Araly1|491945|fgenesh2_kg.7__1378__AT4G28280.1 311 5e-84
> Ahg480904 jgi|Araly1|480904|fgenesh2_kg.3__3605__AT2G20700.1
Length=630
Score = 987 bits (534), Expect = 0.0
Identities = 602/634 (95%), Gaps = 8/634 (1%)
Strand=Plus/Plus
Query 52 aagagaagagaagagaagagaggaagaatcagagaaaCAATGGAGATTTCTCCTTACTGT 111
|||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAGAAAAGAGAAGAGAAGAGAAGAAGAAACAGAGAAACAATGGAGATTTCTCCTTACTGT 60
Query 112 CTGCTTTCTCTTCTTCCCATTTTCCTCCTCTCTGGTTTCTCCCTT-TCATATGATGAATT 170
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 61 CTGCTTTCTCTTCTTCCCATTTTCCTCCTCTCTGGTTTCT-CCTTCTCATATGATGAATT 119
Query 171 TGATGGTCACGCAGCAACAAGCAGAGCTCTTCTTCAGACAAGGACAACCTGCAAAGAAGA 230
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TGATGGTCACGCAGCCACAAGCAGAGCTCTTCTTCAGACAAGGACAACGTGCAAAGAAGA 179
Query 231 TTTTGCTAACAAGAACTACACAATCATAACAAGCAGATGCAAAGGACCAAATTATCCGGC 290
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TTTCGCAAACAAGAACTACACAATCATAACAAGCAGATGTAAAGGACCAAATTATCCGGC 239
Query 291 AAATGTGTGTTGCTCCGCCTTCAAGGACTTTGCTTGCCCTTTTGCAGAAGTTCTTAACGA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAATGTGTGTTGCTCCGCCTTCAAGGACTTTGCTTGCCCTTTTGCAGAAGTTCTTAACGA 299
Query 351 CGAAAAGAACGATTGTGCCTCCACAATGTTCAGCTACATCAACCTTTACGGTCGTTATCC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGAAAAGAACGATTGTGCCTCCACAATGTTCAGCTACATCAACCTTTACGGTCGTTATCC 359
Query 411 TCCTGGAATCTTTGCCAACATGTGTAAAGAGGGCAAAGAAGGTCTTGACTGCACTGATGT 470
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 360 TCCTGGAATCTTTGCCAACATGTGTAAAGAAGGCAAAGAAGGTCTTGACTGCACTAATGT 419
Query 471 CACCCAGTCCGCATCCGCAACTTCTGATTCTATCCCACGTGCCTCCACAACTGCATCTCT 530
||||||||||||||| |||||||||||||||| ||| || |||||| |||||||||||||
Sbjct 420 CACCCAGTCCGCATCTGCAACTTCTGATTCTAACCCCCGAGCCTCCGCAACTGCATCTCT 479
Query 531 CGCGGTTCTTTCTACCTTCCTCGTTCTGTGTCTTTTGTTCTTATCGTCT-TGAAGTCTTA 589
||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||
Sbjct 480 CGCGGTTCTTTCTACCTTCCTCGTTCTCTGTCTTTTGTTCTTGTC-TCCGTGAAGTCTTA 538
Query 590 ATAACACATCTCAGAACTTGTTTTATGGGTAAA-AACACATTTATATATGCCTCTTGGTC 648
||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||
Sbjct 539 ATAACACATCTCAGAACATGTTTTATGGATAAAGAACACATT-ATATATGCCTCTTGGTG 597
Query 649 TTATGTAT-ACAACTCCCTTTCTTATAAACTTCT 681
|||||| | | |||||| |||||| |||||||||
Sbjct 598 TTATGTCTTA-AACTCCTTTTCTTTTAAACTTCT 630
> Ahg491945 jgi|Araly1|491945|fgenesh2_kg.7__1378__AT4G28280.1
Length=823
Score = 311 bits (168), Expect = 5e-84
Identities = 227/256 (89%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 220 TGCAAAGAAGATTTTGCTAACAAGAACTACACAATCATAACAAGCAGATGCAAAGGACCA 279
||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||
Sbjct 414 TGCAAAGAAGATTTTGCGGCCAAGAATTACACAATCATAACAAGTAAATGCAAAGGACCA 473
Query 280 AATTATCCGGCAAATGTGTGTTGCTCCGCCTTCAAGGACTTTGCTTGCCCTTTTGCAGAA 339
||||||||||| || || |||||||| ||||||||||||||||||||||| || || |||
Sbjct 474 AATTATCCGGCCAAGGTATGTTGCTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGGAA 533
Query 340 GTTCTTAACGACGAAAAGAAC-GATTGTGCCTCCACAATGTTCAGCTACATCAACCTTTA 398
|||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||
Sbjct 534 GTTCTTAACGACGAAAAG-ACAGATTGTGCCTCCACAATGTTCAGCTACATCAATCTCTA 592
Query 399 CGGTCGTTATCCTCCTGGAATCTTTGCCAACATGTGTAAAGAGGGCAAAGAAGGTCTTGA 458
|||||||||||||||||||| || || |||||||| ||||| ||||||||||| || ||
Sbjct 593 TGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGCCTCGA 652
Query 459 CTGCACTGATGTCACC 474
||||| | ||||||
Sbjct 653 TTGCACCAACGTCACC 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25389862722
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5